Commits · 4082c898d8d07acc2d7f7003b4af14968b5b1192 · Xavier Grand / bolero

Browse files

Oct 10, 2024
- Add default ont-guppy option to basecalling, --model-file · 4082c898
  Xavier Grand authored Oct 10, 2024
  
  4082c898
- Add default ont-guppy option to basecalling, --model-file · 6b32f9dc
  Xavier Grand authored Oct 10, 2024
  
  6b32f9dc
Oct 03, 2024
- modif profile pollux suppress scratch* · e84a0ce1
  Xavier Grand authored Oct 3, 2024
  
  e84a0ce1
Sep 24, 2024
- Test seqkit version 2.5.1 · 78029593
  Xavier Grand authored Sep 24, 2024
  
  78029593
Sep 23, 2024
- Restore seqkit v2.1.0 · 5c484105
  Xavier Grand authored Sep 23, 2024
  
  5c484105
Sep 17, 2024
- concatenate repair. · 3215b471
  Xavier Grand authored Sep 17, 2024
  
  3215b471
Aug 09, 2024
- Modif multi cpus to junction nanosplicer and rebuild docker. · 8fa681cb
  Xavier Grand authored Aug 9, 2024
  
  8fa681cb
- Modif r-bolero version junction-nanosplicer module · 02e29a36
  Xavier Grand authored Aug 9, 2024
  
  02e29a36
- Modify input to start_positions to multithreading and rebuild docker. · c6c0db92
  Xavier Grand authored Aug 9, 2024
  
  c6c0db92
- Modify label to multi cpus of rna_count and start_positions modules. · 18e4119a
  Xavier Grand authored Aug 9, 2024
  
  18e4119a
Jul 11, 2024
- modif concatenate/main.nf · 77ffd261
  Xavier Grand authored Jul 11, 2024
  
  77ffd261
Jul 10, 2024
- Docker r-bolero 1.2 docker profile functionning · 65ac98b5
  Xavier Grand authored Jul 10, 2024
  
  65ac98b5
Feb 20, 2024
- Add orelob.nf, pipeline to analyse 3pRACE-Nanopore RNAseq. · 260af0c7
  Xavier Grand authored Feb 20, 2024
  
  260af0c7
Nov 21, 2023
- Update junction_nanosplicer rna_count start_positions to version 1.1 · c0e86792
  Xavier Grand authored Nov 21, 2023
  
  c0e86792
Sep 26, 2023
- Add pychopper instead porechop not functionnal · 4dc89d1a
  Xavier Grand authored Sep 26, 2023
  
  4dc89d1a
Aug 18, 2023
- minor modif porechop/main.nf --input ../ · e83abf7a
  Xavier Grand authored Aug 18, 2023
  
  e83abf7a
- minor modif porechop/main.nf --input $(readlink -f ../) · 614ced31
  Xavier Grand authored Aug 18, 2023
  
  614ced31
- minor modif porechop/main.nf --input ../ · e20f15e6
  Xavier Grand authored Aug 18, 2023
  
  e20f15e6
- Modify samtools/main.nf AS filter from 500 to 100. · 71c8b121
  Xavier Grand authored Aug 18, 2023
  
  71c8b121
Aug 17, 2023
- Add Alignment Score filtration but need to take into account the length of reads. · 372438ee
  Xavier Grand authored Aug 17, 2023
  
  372438ee
Aug 16, 2023
- Add porechop and compress all fastq files during the workflow. · eb1df0db
  Xavier Grand authored Aug 16, 2023
  
  eb1df0db
- add 390bp filtration of reads. · 29498d03
  Xavier Grand authored Aug 16, 2023
  
  29498d03
Aug 09, 2023
- Modification of JWR_checker.py of NanoSplicer tool and corresponding Dockerfile · 68fe4dca
  Xavier Grand authored Aug 9, 2023
  
  68fe4dca
Aug 03, 2023
- Add errorStrategy 'ignore' to nanosplicer process · 37436e4d
  Xavier Grand authored Aug 3, 2023
  
  37436e4d
Aug 01, 2023
- Resolution petits bugs · a59be7fa
  Xavier Grand authored Aug 1, 2023
  
  a59be7fa
Jul 26, 2023
- Nettoyage du code · ec9840f9
  aliarifki authored Jul 26, 2023
  
  ec9840f9
Jul 17, 2023
- Suppression de l'option config_file · dadbebbc
  aliarifki authored Jul 17, 2023
  
  dadbebbc
Jul 13, 2023
- Configuration file for barcoding gpu · 662bcfc8
  aliarifki authored Jul 13, 2023
  
  662bcfc8
Jul 10, 2023
- nouveaux paramètres minimap · d52844c5
  aliarifki authored Jul 10, 2023
  
  d52844c5
Jul 05, 2023
- Container pour start positoins count · cbf0b544
  aliarifki authored Jul 5, 2023
  
  cbf0b544
Jul 03, 2023
- Process quality control with bam files · c90f0965
  aliarifki authored Jul 3, 2023
  
  c90f0965
Jun 30, 2023
- Suppression du paramètre options · 291f4f6c
  aliarifki authored Jun 29, 2023
  
  291f4f6c
- Correction de bugs · 8e9aa886
  aliarifki authored Jun 29, 2023
  8e9aa886
- Transformation des fichiers de sortie de barcoding en tuple pour concatenate · b9928b0e
  aliarifki authored Jun 23, 2023
  b9928b0e
- Erreur de parenthèse · c086689b
  aliarifki authored Jun 22, 2023
  
  c086689b
- Modification du nom du process · 2ffaef30
  aliarifki authored Jun 22, 2023
  
  2ffaef30
- Correction de la fonction basecalling gpu · 51ef747b
  aliarifki authored Jun 22, 2023
  
  51ef747b
- Correction des erreurs du process barcoding · 99354655
  aliarifki authored Jun 22, 2023
  
  99354655
- Ajout ded l'option barcode aux scripts R · 43aa2ff0
  aliarifki authored Jun 22, 2023
  43aa2ff0
- Ajout du process barcoding · 12922fc2
  aliarifki authored Jun 21, 2023
  
  12922fc2