Skip to content
Snippets Groups Projects
Commit 4082c898 authored by Xavier Grand's avatar Xavier Grand
Browse files

Add default ont-guppy option to basecalling, --model-file

parent 6b32f9dc
No related branches found
No related tags found
No related merge requests found
......@@ -64,7 +64,7 @@ guppy_basecaller --compress_fastq \
"""
}
// A modifier quand le process gpu marchera
params.options = "--model_file /opt/ont/guppy/data/dna_r9.4.1_e8.1_sup.cfg"
process basecall_fast5_cpu {
container = "${container_url}"
label "big_mem_multi_cpus"
......@@ -115,7 +115,7 @@ guppy_basecaller --compress_fastq \
--cpu_runners_per_device ${params.cpu_runners_per_device} \
--num_callers ${params.num_callers} \
--chunks_per_runner ${params.chunks_per_runner} \
${options}
${param.options}
"""
}
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment