Commits · dbbbac3011e1bff6d893c3f6596daeb755156c6d · Xavier Grand / ChIPster · GitLab

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Apr 14, 2021
- CONTRIBUTING.md: add info on channel creation · dbbbac30
  Laurent Modolo authored 3 years ago
  
  dbbbac30
- bwa: update to match CONTRIBUTING.md · c6dce992
  Laurent Modolo authored 3 years ago
  
  c6dce992
- bowtie: update to match CONTRIBUTING.md · b867bf9a
  Laurent Modolo authored 3 years ago
  
  b867bf9a
- fastp: update accel_s1plus protocol · 1f72b2c4
  Laurent Modolo authored 3 years ago
  
  1f72b2c4
- samtools: update to follow CONTRIBUTING.md · 84daa858
  Laurent Modolo authored 3 years ago
  
  84daa858
- bowtie2: replace pair_id by file_id · 7c1e0c6c
  Laurent Modolo authored 3 years ago
  
  7c1e0c6c
- bowtie2: fix input tuple :45 · 5de7aac6
  Laurent Modolo authored 3 years ago
  
  5de7aac6
- bowtie2: update to match contributing.md · fd494cd5
  Laurent Modolo authored 3 years ago
  
  fd494cd5
- nf_modules: update module from g2gtools to multiqc to match the CONTRIBUTING.md · 8afe54bb
  Laurent Modolo authored 3 years ago
  
  8afe54bb
- fastp: fix variable name in fastp_accel_1splus · 9c9cf82d
  Laurent Modolo authored 3 years ago
  
  9c9cf82d
- mv PSMN singularity img to /Xnfs/abc/singularity/ · 9365b6e3
  Laurent Modolo authored 3 years ago
  
  9365b6e3
- CONTRIBUTING.md: end of the nf_modules section · 020a69e4
  Laurent Modolo authored 3 years ago
  
  020a69e4
- fastp: update fastp to match CONTRIBUTING.md · 2924d6ef
  Laurent Modolo authored 3 years ago
  
  2924d6ef
- kallisto: update script to match CONTRIBUTING.md · be4657c7
  Laurent Modolo authored 3 years ago
  
  be4657c7
- kallisto: fix warning in mapping_fastq about single-end parameters · 6f027a2e
  Laurent Modolo authored 3 years ago
  
  6f027a2e
Apr 13, 2021
- CONTRIBUTING.md: start to rewrite new instruction with DSL2 · 87dbf344
  Laurent Modolo authored 3 years ago
  
  87dbf344
- update solution_RNASeq.nf to match CONTRIBUTING.md · 8b70de28
  Laurent Modolo authored 3 years ago
  
  8b70de28
- bedtools: fix typo :19 · bc81c837
  Laurent Modolo authored 3 years ago
  
  bc81c837
- kallisto: fix typo :15 · b2f88ee7
  Laurent Modolo authored 3 years ago
  
  b2f88ee7
- bedtools: update to match CONTRIBUTING.md · 699cd563
  Laurent Modolo authored 3 years ago
  
  699cd563
- kallisto: update file to match CONTRIBUTING.md · 9a588dd5
  Laurent Modolo authored 3 years ago
  
  9a588dd5
- solution_RNASeq.nf: use generic process instead of _pairedend ones · 0245b04c
  Laurent Modolo authored 3 years ago
  
  0245b04c
- kallisto: fix typo :47 · 8ddc3ee6
  Laurent Modolo authored 3 years ago
  
  8ddc3ee6
- cutadapt: fix typo :34 · d69ff6ea
  Laurent Modolo authored 3 years ago
  
  d69ff6ea
- cutadapt: fix bug :28 · 18e214ae
  Laurent Modolo authored 3 years ago
  
  18e214ae
- README.md: add upstream mergin commands · cfd74897
  Laurent Modolo authored 3 years ago
  
  cfd74897
- nextflow.config: add small_mem label · 47556f87
  Laurent Modolo authored 3 years ago
  
  47556f87
- rm old script from src/ · 3e09b513
  Laurent Modolo authored 3 years ago
  
  3e09b513
- change path for the shared singularity img at the ccin2p3 · 39464370
  Laurent Modolo authored 3 years ago
  
  39464370
- getting_started.md: update and add a profile section · 02a139f3
  Laurent Modolo authored 3 years ago
  
  02a139f3
- fastp: add --interleaved_in for 2nd fastp for accel_s1plus · 8ef138b4
  Laurent Modolo authored 3 years ago
  
  8ef138b4
- fastp: update accel_1splus protocol · d2e7b69c
  Laurent Modolo authored 3 years ago
  
  d2e7b69c
- fastp: add accel_1splus protocol trimming with a switch · c98150b9
  Laurent Modolo authored 3 years ago
  
  c98150b9
Apr 08, 2021
- nf_modules: add params.<process_names> for each process · 4a7355a2
  Laurent Modolo authored 3 years ago
  
  4a7355a2
- bwa: add params.bwa · ece57ce1
  Laurent Modolo authored 3 years ago
  
  ece57ce1
- fastp: add params.fastp · e8c33f90
  Laurent Modolo authored 3 years ago
  
  e8c33f90
Apr 02, 2021
- Merge branch 'master' into 'master' · 52112e7d
  Laurent Modolo authored 3 years ago
  
  tophat dockerfile : fix beug and add bowtie1 installation See merge request LBMC/nextflow!21
  52112e7d
- Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/nextflow · b044a62e
  adminmanu authored 3 years ago
  
  b044a62e
Mar 25, 2021
- Docker: add alntools:dd96682 · a83195d8
  Laurent Modolo authored 4 years ago
  
  a83195d8
- Docker: add emase-zero:0.3.1 · 3888c6a4
  Laurent Modolo authored 4 years ago
  
  3888c6a4