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Verified Commit 8ef138b4 authored by Laurent Modolo's avatar Laurent Modolo
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fastp: add --interleaved_in for 2nd fastp for accel_s1plus

parent d2e7b69c
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......@@ -101,6 +101,7 @@ fastp --thread ${task.cpus} \
--out2 ${pair_id}_R2_trim.fastq.gz | \
fastp --thread ${task.cpus} \
--stdin \
--interleaved_in \
--trim_front1=10 \
--trim_front2=10 \
--qualified_quality_phred 20 \
......
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