Merge branch 'master' into 'master'

tophat dockerfile : fix beug and add bowtie1 installation

See merge request !21

src/.docker_modules/ribotricer/1.3.2/Dockerfile

+FROM ubuntu:20.04
+MAINTAINER Emmanuel Labaronne
+
+ENV RIBOTRICER_VERSION=1.3.2
+ENV PACKAGES python3\
+             python3-dev\
+             python3-pip
+
+RUN apt-get update && \
+    apt-get install -y ${PACKAGES} && \
+    apt-get clean
+
+RUN pip3 install ribotricer==${RIBOTRICER_VERSION}

src/.docker_modules/ribotricer/1.3.2/docker_init.sh

+#!/bin/sh
+docker pull lbmc/ribotricer:1.3.2
+docker build src/.docker_modules/ribotricer/1.3.2 -t 'lbmc/ribotricer:1.3.2'
+docker push lbmc/ribotricer:1.3.2

src/.docker_modules/tophat/2.1.1/Dockerfile

@@ -2,8 +2,10 @@ FROM ubuntu:18.04
 MAINTAINER Laurent Modolo
 
 ENV TOPHAT_VERSION=2.1.1
-ENV PACKAGES tophat=${BOWTIE2_VERSION}*
+ENV PACKAGES tophat=${TOPHAT_VERSION}*\
+             bowtie=1.2.2*\
+             libsys-hostname-long-perl
 
 RUN apt-get update && \
-    apt-get install -y --no-install-recommends ${PACKAGES} && \
+    apt-get install -y --no-install-recommends ${PACKAGES}  && \
     apt-get clean