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Verified Commit 0245b04c authored by Laurent Modolo's avatar Laurent Modolo
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solution_RNASeq.nf: use generic process instead of _pairedend ones

parent 8ddc3ee6
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......@@ -28,9 +28,9 @@ include { index_fasta; mapping_fastq } from './nf_modules/kallisto/main'
workflow {
adaptor_removal(fastq_files)
trimming(adaptor_removal_pairedend.out.fastq)
trimming(adaptor_removal.out.fastq)
fasta_from_bed(fasta_files, bed_files)
index_fasta(fasta_from_bed.out.fasta)
mapping_fastq(index_fasta.out.index.collect(), trimming_pairedend.out.fastq)
mapping_fastq(index_fasta.out.index.collect(), trimming.out.fastq)
}
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