diff --git a/src/solution_RNASeq.nf b/src/solution_RNASeq.nf index 1a844b01eba9cbb06891aa33176ef9c759393312..f0b4cae8119190e08f18ead5b071287ee67d0eff 100644 --- a/src/solution_RNASeq.nf +++ b/src/solution_RNASeq.nf @@ -28,9 +28,9 @@ include { index_fasta; mapping_fastq } from './nf_modules/kallisto/main' workflow { adaptor_removal(fastq_files) - trimming(adaptor_removal_pairedend.out.fastq) + trimming(adaptor_removal.out.fastq) fasta_from_bed(fasta_files, bed_files) index_fasta(fasta_from_bed.out.fasta) - mapping_fastq(index_fasta.out.index.collect(), trimming_pairedend.out.fastq) + mapping_fastq(index_fasta.out.index.collect(), trimming.out.fastq) }