From 0245b04cc8344b39dcd35b9d016f6d3addbd51f4 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 13 Apr 2021 17:42:15 +0200
Subject: [PATCH] solution_RNASeq.nf: use generic process instead of _pairedend
ones
---
src/solution_RNASeq.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/solution_RNASeq.nf b/src/solution_RNASeq.nf
index 1a844b01..f0b4cae8 100644
--- a/src/solution_RNASeq.nf
+++ b/src/solution_RNASeq.nf
@@ -28,9 +28,9 @@ include { index_fasta; mapping_fastq } from './nf_modules/kallisto/main'
workflow {
adaptor_removal(fastq_files)
- trimming(adaptor_removal_pairedend.out.fastq)
+ trimming(adaptor_removal.out.fastq)
fasta_from_bed(fasta_files, bed_files)
index_fasta(fasta_from_bed.out.fasta)
- mapping_fastq(index_fasta.out.index.collect(), trimming_pairedend.out.fastq)
+ mapping_fastq(index_fasta.out.index.collect(), trimming.out.fastq)
}
--
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