Commits · ade97af35ae0bd96180b488f33c7b18c872880e4 · Xavier Grand / ChIPster

Feb 25, 2021
- bwa: fix bwa_mem_R call · ade97af3
  Laurent Modolo authored 4 years ago
  
  ade97af3
- bwa: add params.bwa_mem_R variable · 449693e2
  Laurent Modolo authored 4 years ago
  
  449693e2
Feb 24, 2021
- picard: fix output name of index_fasta · 40ebfabd
  Laurent Modolo authored 4 years ago
  
  40ebfabd
Feb 22, 2021
- picard: main.nf: improve output index_fasta output · 083a9441
  Laurent Modolo authored 4 years ago
  
  083a9441
- picard: improve picard index output · 2fde78ba
  Laurent Modolo authored 4 years ago
  
  2fde78ba
- samtools: fix merge_multi_bam · 493aaa15
  Laurent Modolo authored 4 years ago
  
  493aaa15
- samtools: fix merge_multi_bam · aa838665
  Laurent Modolo authored 4 years ago
  
  aa838665
- macs2: add file_id to output · 9a88f356
  Laurent Modolo authored 4 years ago
  
  9a88f356
- bwa: fix report name · b725862d
  Laurent Modolo authored 4 years ago
  
  b725862d
Feb 20, 2021
- macs2: emit tuple with file_id · e7ba77d3
  Laurent Modolo authored 4 years ago
  
  e7ba77d3
- macs2: emit tuple with file_id · 6ebfb041
  Laurent Modolo authored 4 years ago
  
  6ebfb041
- bwa: fix typo :42 · e7bfb733
  Laurent Modolo authored 4 years ago
  
  e7bfb733
- bwa: fix typo :42 · c99e5a39
  Laurent Modolo authored 4 years ago
  
  c99e5a39
- macs2: fix narrowpeak capture · bd7b89f4
  Laurent Modolo authored 4 years ago
  
  bd7b89f4
- docker: bwa replace sambamba with samtools · ec1d8657
  Laurent Modolo authored 4 years ago
  
  ec1d8657
- bwa: replace sambamba by sambools · 0e7adae3
  Laurent Modolo authored 4 years ago
  
  0e7adae3
- macs2: cleanup output · c6189ba3
  Laurent Modolo authored 4 years ago
  
  c6189ba3
- nextflow.config:improove pmsn 32 cpus queue · 175a472e
  Laurent Modolo authored 4 years ago
  
  175a472e
- docker: bwa fix sambamba rights · 618c6ac7
  Laurent Modolo authored 4 years ago
  
  618c6ac7
Feb 18, 2021
- bwa: fix typo :42 · b0cf08d6
  Laurent Modolo authored 4 years ago
  
  b0cf08d6
- fastp: fix output name to be catched by multiqc · b5a93ee3
  Laurent Modolo authored 4 years ago
  
  b5a93ee3
- fastp: fix output to capture json files · ad8474e6
  Laurent Modolo authored 4 years ago
  
  ad8474e6
- nextflow.config: fix psmn monocpu cmd · 4b33241e
  Laurent Modolo authored 4 years ago
  
  4b33241e
- nextflow.config: add 192 monointerl queue for psmn · e7d4fec1
  Laurent Modolo authored 4 years ago
  
  e7d4fec1
- add multiqc 1.9 · 819684ce
  Laurent Modolo authored 4 years ago
  
  819684ce
- fastp: add json output for multiqc · 9cc57a97
  Laurent Modolo authored 4 years ago
  
  9cc57a97
- multiqc: fix typo :7 · 6faa2900
  Laurent Modolo authored 4 years ago
  
  6faa2900
- macs2: fix mfold option · 8c295a37
  Laurent Modolo authored 4 years ago
  
  8c295a37
- multiqc: add publishDir · 00e1e797
  Laurent Modolo authored 4 years ago
  
  00e1e797
- bedtools: add merge_bed process · 9ec0803c
  Laurent Modolo authored 4 years ago
  
  9ec0803c
- fastp: add fastp 0.20.1 · 5b444810
  Laurent Modolo authored 4 years ago
  
  5b444810
- macs2: rm mfold param · d115c1c1
  Laurent Modolo authored 4 years ago
  
  d115c1c1
- macs2: fix macs call cmd · 88b5f2d5
  Laurent Modolo authored 4 years ago
  
  88b5f2d5
- macs2.nf: fix processes to match macs3 · 7d01e0e0
  Laurent Modolo authored 4 years ago
  
  7d01e0e0
- macs3: add mfold option · d41a1c90
  Laurent Modolo authored 4 years ago
  
  d41a1c90
- macs3: fix gsize parameter · 4f37c0be
  Laurent Modolo authored 4 years ago
  
  4f37c0be
- macs3: change queue option to mono_cpus · 558ec8ce
  Laurent Modolo authored 4 years ago
  
  558ec8ce
- macs3: fix call-summits option · 2f8070de
  Laurent Modolo authored 4 years ago
  
  2f8070de
- macs3: test new syntax for options · bd7dec8f
  Laurent Modolo authored 4 years ago
  
  bd7dec8f
- macs3: fix call cmd · c4218fde
  Laurent Modolo authored 4 years ago
  
  c4218fde