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Verified Commit 2f8070de authored by Laurent Modolo's avatar Laurent Modolo
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macs3: fix call-summits option

parent bd7dec8f
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......@@ -20,7 +20,7 @@ process peak_calling {
"""
macs3 callpeak \
--treatment ${bam_ip} \
--call-summits True \
--call-summits \
--control ${bam_control} \
--keep-dup all \
--name ${bam_ip.simpleName} \
......@@ -55,7 +55,7 @@ awk '{print \$1"\t"\$2"\t"\$3"\t.\t+\t"\$4}' ${bg_control} > \
${bg_control.simpleName}.bed
macs3 callpeak \
--treatment ${bg_ip.simpleName}.bed \
--call-summits True \
--call-summits \
--control ${bg_control.simpleName}.bed \
--keep-dup all \
--name ${bg_ip.simpleName} \
......
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