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Verified Commit 2f8070de authored by Laurent Modolo's avatar Laurent Modolo
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macs3: fix call-summits option

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src/nf_modules/macs3/main.nf
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...@@ -20,7 +20,7 @@ process peak_calling { ...@@ -20,7 +20,7 @@ process peak_calling {
""" """
macs3 callpeak \ macs3 callpeak \
--treatment ${bam_ip} \ --treatment ${bam_ip} \
--call-summits True \ --call-summits \
--control ${bam_control} \ --control ${bam_control} \
--keep-dup all \ --keep-dup all \
--name ${bam_ip.simpleName} \ --name ${bam_ip.simpleName} \
...@@ -55,7 +55,7 @@ awk '{print \$1"\t"\$2"\t"\$3"\t.\t+\t"\$4}' ${bg_control} > \ ...@@ -55,7 +55,7 @@ awk '{print \$1"\t"\$2"\t"\$3"\t.\t+\t"\$4}' ${bg_control} > \
${bg_control.simpleName}.bed ${bg_control.simpleName}.bed
macs3 callpeak \ macs3 callpeak \
--treatment ${bg_ip.simpleName}.bed \ --treatment ${bg_ip.simpleName}.bed \
--call-summits True \ --call-summits \
--control ${bg_control.simpleName}.bed \ --control ${bg_control.simpleName}.bed \
--keep-dup all \ --keep-dup all \
--name ${bg_ip.simpleName} \ --name ${bg_ip.simpleName} \
......
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