Skip to content
Snippets Groups Projects
Verified Commit d115c1c1 authored by Laurent Modolo's avatar Laurent Modolo
Browse files

macs2: rm mfold param

parent 88b5f2d5
No related branches found
No related tags found
No related merge requests found
......@@ -2,7 +2,6 @@ version = "2.1.2"
container_url = "lbmc/macs2:${version}"
params.macs_gsize=3e9
params.macs_mfold=[5, 50]
process peak_calling {
container = "${container_url}"
......@@ -24,7 +23,6 @@ macs2 callpeak \
--call-summits \
--control ${bam_control} \
--keep-dup all \
--mfold params.macs_mfold[0] params.macs_mfold[1]
--name ${bam_ip.simpleName} \
--gsize ${params.macs_gsize} 2> \
${bam_ip.simpleName}_macs2_report.txt
......@@ -60,7 +58,6 @@ macs2 callpeak \
--call-summits \
--control ${bg_control.simpleName}.bed \
--keep-dup all \
--mfold params.macs_mfold[0] params.macs_mfold[1]
--name ${bg_ip.simpleName} \
--gsize ${params.macs_gsize} 2> \
${bg_ip.simpleName}_macs2_report.txt
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment