From d115c1c1c2263101f9d63793b4d2efc7d969a682 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 18 Feb 2021 11:57:05 +0100
Subject: [PATCH] macs2: rm mfold param
---
src/nf_modules/macs2/main.nf | 3 ---
1 file changed, 3 deletions(-)
diff --git a/src/nf_modules/macs2/main.nf b/src/nf_modules/macs2/main.nf
index d5306e5b..2d437c3e 100644
--- a/src/nf_modules/macs2/main.nf
+++ b/src/nf_modules/macs2/main.nf
@@ -2,7 +2,6 @@ version = "2.1.2"
container_url = "lbmc/macs2:${version}"
params.macs_gsize=3e9
-params.macs_mfold=[5, 50]
process peak_calling {
container = "${container_url}"
@@ -24,7 +23,6 @@ macs2 callpeak \
--call-summits \
--control ${bam_control} \
--keep-dup all \
- --mfold params.macs_mfold[0] params.macs_mfold[1]
--name ${bam_ip.simpleName} \
--gsize ${params.macs_gsize} 2> \
${bam_ip.simpleName}_macs2_report.txt
@@ -60,7 +58,6 @@ macs2 callpeak \
--call-summits \
--control ${bg_control.simpleName}.bed \
--keep-dup all \
- --mfold params.macs_mfold[0] params.macs_mfold[1]
--name ${bg_ip.simpleName} \
--gsize ${params.macs_gsize} 2> \
${bg_ip.simpleName}_macs2_report.txt
--
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