fastp: add fastp 0.20.1

src/.docker_modules/fastp/0.20.1/Dockerfile

+FROM quay.io/biocontainers/fastp:0.20.1--h8b12597_0
+MAINTAINER Laurent Modolo

src/.docker_modules/fastp/0.20.1/docker_init.sh

+#!/bin/sh
+docker pull lbmc/fastp:0.20.1
+docker build src/.docker_modules/fastp/0.20.1 -t 'lbmc/fastp:0.20.1'
+docker push lbmc/fastp:0.20.1

src/nf_modules/fastp/main.nf

+version = "0.20.1"
+container_url = "lbmc/fastp:${version}"
+
+
+process fastp_pairedend {
+  container = "${container_url}"
+  label "big_mem_multi_cpus"
+  tag "$pair_id"
+
+  input:
+  tuple val(pair_id), path(reads)
+
+  output:
+    tuple val(pair_id), path("*.fastq.gz"), emit: fastq
+    tuple val(pair_id), path("*.{zip,html}"), emit: report
+
+  script:
+"""
+fastp --thread ${task.cpus} \
+--qualified_quality_phred 20 \
+--disable_length_filtering \
+--detect_adapter_for_pe \
+--in1 ${reads[0]} \
+--in2 ${reads[1]} \
+--out1 ${pair_id}_R1_trim.fastq.gz \
+--out2 ${pair_id}_R2_trim.fastq.gz \
+--html ${pair_id}.html \
+--report_title ${pair_id}
+"""
+}
+
+process fastp_singleend {
+  container = "${container_url}"
+  label "big_mem_multi_cpus"
+  tag "$pair_id"
+
+  input:
+  tuple val(pair_id), path(reads)
+
+  output:
+    tuple val(pair_id), path("*.fastq.gz"), emit: fastq
+    tuple val(pair_id), path("*.{zip,html}"), emit: report
+
+  script:
+"""
+fastp --thread ${task.cpus} \
+--qualified_quality_phred 20 \
+--disable_length_filtering \
+--detect_adapter_for_pe \
+--in1 ${reads} \
+--out1 ${pair_id}_trim.fastq.gz \
+--html ${pair_id}.html \
+--report_title ${pair_id}
+"""
+}