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Verified Commit 8c295a37 authored by Laurent Modolo's avatar Laurent Modolo
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macs2: fix mfold option

parent 00e1e797
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......@@ -2,6 +2,7 @@ version = "2.1.2"
container_url = "lbmc/macs2:${version}"
params.macs_gsize=3e9
params.macs_mfold="5 50"
process peak_calling {
container = "${container_url}"
......@@ -24,6 +25,7 @@ macs2 callpeak \
--control ${bam_control} \
--keep-dup all \
--name ${bam_ip.simpleName} \
--mfold ${params.macs_mfold} \
--gsize ${params.macs_gsize} 2> \
${bam_ip.simpleName}_macs2_report.txt
......@@ -59,6 +61,7 @@ macs2 callpeak \
--control ${bg_control.simpleName}.bed \
--keep-dup all \
--name ${bg_ip.simpleName} \
--mfold ${params.macs_mfold} \
--gsize ${params.macs_gsize} 2> \
${bg_ip.simpleName}_macs2_report.txt
......
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