From 8c295a37471a3ad416502a629c605be14d09afc3 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 18 Feb 2021 15:39:30 +0100
Subject: [PATCH] macs2: fix mfold option
---
src/nf_modules/macs2/main.nf | 3 +++
1 file changed, 3 insertions(+)
diff --git a/src/nf_modules/macs2/main.nf b/src/nf_modules/macs2/main.nf
index 2d437c3e..57bf3d7e 100644
--- a/src/nf_modules/macs2/main.nf
+++ b/src/nf_modules/macs2/main.nf
@@ -2,6 +2,7 @@ version = "2.1.2"
container_url = "lbmc/macs2:${version}"
params.macs_gsize=3e9
+params.macs_mfold="5 50"
process peak_calling {
container = "${container_url}"
@@ -24,6 +25,7 @@ macs2 callpeak \
--control ${bam_control} \
--keep-dup all \
--name ${bam_ip.simpleName} \
+ --mfold ${params.macs_mfold} \
--gsize ${params.macs_gsize} 2> \
${bam_ip.simpleName}_macs2_report.txt
@@ -59,6 +61,7 @@ macs2 callpeak \
--control ${bg_control.simpleName}.bed \
--keep-dup all \
--name ${bg_ip.simpleName} \
+ --mfold ${params.macs_mfold} \
--gsize ${params.macs_gsize} 2> \
${bg_ip.simpleName}_macs2_report.txt
--
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