diff --git a/src/nf_modules/macs2/main.nf b/src/nf_modules/macs2/main.nf index 2d437c3e6ee4b1e9e6a219f1301bef699d4fe036..57bf3d7ea32f69c4f34379e2e700978d82343102 100644 --- a/src/nf_modules/macs2/main.nf +++ b/src/nf_modules/macs2/main.nf @@ -2,6 +2,7 @@ version = "2.1.2" container_url = "lbmc/macs2:${version}" params.macs_gsize=3e9 +params.macs_mfold="5 50" process peak_calling { container = "${container_url}" @@ -24,6 +25,7 @@ macs2 callpeak \ --control ${bam_control} \ --keep-dup all \ --name ${bam_ip.simpleName} \ + --mfold ${params.macs_mfold} \ --gsize ${params.macs_gsize} 2> \ ${bam_ip.simpleName}_macs2_report.txt @@ -59,6 +61,7 @@ macs2 callpeak \ --control ${bg_control.simpleName}.bed \ --keep-dup all \ --name ${bg_ip.simpleName} \ + --mfold ${params.macs_mfold} \ --gsize ${params.macs_gsize} 2> \ ${bg_ip.simpleName}_macs2_report.txt