Commits · aa917c02d3af8452cefdec18f3b5aaf9313adfb7 · Xavier Grand / ChIPster

Aug 11, 2021
- src/chipster.nf fonctionnel utilisé sur les data Chipseq CTCF · aa917c02
  Xavier Grand authored 3 years ago
  
  aa917c02
- src/chipster.nf fixed single & paired end, until bigwig · 893fbb6e
  Xavier Grand authored 3 years ago
  
  893fbb6e
- src/chipster.nf fix pipe with .map, paired-end fastq · 5736c4c9
  Xavier Grand authored 3 years ago
  
  5736c4c9
Aug 06, 2021
- idx genome · a8e3b04f
  Xavier Grand authored 3 years ago
  
  a8e3b04f
- idx genome mod · c4792fa5
  Xavier Grand authored 3 years ago
  
  c4792fa5
- indexed genome params · b412a7fa
  Xavier Grand authored 3 years ago
  
  b412a7fa
Jul 30, 2021
- fisrt · b4af1b0e
  Xavier Grand authored 3 years ago
  
  b4af1b0e
Jul 19, 2021
- kb: create a backup of t2g.txt as kb rewrite it · 72580e6b
  Laurent Modolo authored 3 years ago
  
  72580e6b
Jul 15, 2021
- kb: remove gffutils buggy dependency for t2g.txt construction · 57bdbc31
  Laurent Modolo authored 3 years ago
  
  57bdbc31
Jul 13, 2021
- kb: go back to working 0.26.0 version · a9f4a856
  Laurent Modolo authored 3 years ago
  
  a9f4a856
- kb: add libcurl to dockerfile · b300770d
  Laurent Modolo authored 3 years ago
  
  b300770d
Jul 09, 2021
- gffread: remove empty line · 0d30c103
  Laurent Modolo authored 3 years ago
  
  0d30c103
- kb: update to 0.26.3 · f7a50522
  Laurent Modolo authored 3 years ago
  
  f7a50522
- t2g.py: fool proof output format · 14de29a9
  Laurent Modolo authored 3 years ago
  
  14de29a9
Jul 08, 2021
- bedtools: add v2.30.0 · fda70fd4
  Laurent Modolo authored 3 years ago
  
  fda70fd4
Jul 07, 2021
- kb: enable infer tr and gn in t2g.py · f7dad66d
  Laurent Modolo authored 3 years ago
  
  f7dad66d
Jul 05, 2021
- kb: fix cardinality for split() step · 0c461dac
  Laurent Modolo authored 3 years ago
  
  0c461dac
- t2g.py: fix indentation · 3a878b65
  Laurent Modolo authored 3 years ago
  
  3a878b65
Jul 02, 2021
- mlepetit/nextflow-Maxime · 45be888a
  Laurent Modolo authored 3 years ago
  
  45be888a
Jun 30, 2021
- kb: change --lamano option into --workflow lamano · 32c4ad6c
  Laurent Modolo authored 3 years ago
  
  32c4ad6c
Jun 29, 2021
- bioawk: fix fasta2transcriptslength process · 6925f9d0
  Laurent Modolo authored 3 years ago
  
  6925f9d0
- kb: fix missing line :330 · 87abd17d
  Laurent Modolo authored 3 years ago
  
  87abd17d
Jun 28, 2021
- gatk4: rename _out option for gvcf · 22455a05
  Laurent Modolo authored 3 years ago
  
  22455a05
- gatk4: add gvcf to variant_calling_out · 5eae8fe1
  Laurent Modolo authored 3 years ago
  
  5eae8fe1
Jun 24, 2021
- docker: add htseq 0.13.5 · ed5b2f47
  Laurent Modolo authored 3 years ago
  
  ed5b2f47
Jun 22, 2021
- gatk4: change file_prefix definition to handle Map · 2e4cc629
  Laurent Modolo authored 3 years ago
  
  2e4cc629
Jun 21, 2021
- gatk4: remove map only usefull for testing · d42ded32
  Laurent Modolo authored 3 years ago
  
  d42ded32
Jun 17, 2021
- example_variant_calling.nf: fix input channel · 5d11b597
  Laurent Modolo authored 3 years ago
  
  5d11b597
- gatk4: working variant calling pipeline · 2dcade89
  Laurent Modolo authored 3 years ago
  
  2dcade89
Jun 16, 2021
- example_marseq.nf: cosmetic changes · 6b6d059a
  Laurent Modolo authored 3 years ago
  
  6b6d059a
Jun 09, 2021
- deeptools: fix docker file for 3.5.1 · 8d92ac19
  Laurent Modolo authored 3 years ago
  
  8d92ac19
Jun 04, 2021
- deeptools: add libcurl3 dependency · 414cc8b9
  Laurent Modolo authored 3 years ago
  
  414cc8b9
- mutliqc: add flatten step · 3808033c
  Laurent Modolo authored 3 years ago
  
  3808033c
- bowtie2: fix switch :67 · c05b8c6a
  Laurent Modolo authored 3 years ago
  
  c05b8c6a
- multiqc: fix process name · 3cd8d74f
  Laurent Modolo authored 3 years ago
  
  3cd8d74f
- multiqc: add comments on usage · 1ae0c21d
  Laurent Modolo authored 3 years ago
  
  1ae0c21d
- multiqc: add workflow to perform report channel cleanning · 84b2ae0e
  Laurent Modolo authored 3 years ago
  
  84b2ae0e
- cleanup DSL1 test.sh · 2150d981
  Laurent Modolo authored 3 years ago
  
  2150d981
- switcth to nextflow DSL2 · cc2d49f6
  Laurent Modolo authored 3 years ago
  
  cc2d49f6
Jun 02, 2021
- Docker: add emase 0.10.16 · 6614fc01
  Laurent Modolo authored 3 years ago
  
  v2.0.0
  
  6614fc01