bioawk: fix fasta2transcriptslength process

6925f9d0 · Laurent Modolo · 87abd17d · 6925f9d0
Verified Commit 6925f9d0 authored 3 years ago by Laurent Modolo
--- a/src/nf_modules/bioawk/main.nf
+++ b/src/nf_modules/bioawk/main.nf
@@ -19,6 +19,6 @@ process fasta_to_transcripts_lengths {

  script:
 """
-bioawk -c fastx '{print \$name length(\$seq)}' ${fasta} > ${fasta.simpleName}_transcripts_lengths.tsv
+bioawk -c fastx '{print(\$name" "length(\$seq))}' ${fasta} > ${fasta.simpleName}_transcripts_lengths.tsv
 """
 }
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