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b4af1b0e · Xavier Grand · 72580e6b · b4af1b0e · b4af1b0e · b4af1b0e
Commit b4af1b0e authored 3 years ago by Xavier Grand
--- a/.gitignore
+++ b/.gitignore
-nextflow
+nextflow/
 .nextflow.log*
 .nextflow/
 work/
-results
+results/
 workspace.code-workspace
+public/
--- a/src/.docker_modules/alntools/dd96682/docker_init.sh
+++ b/src/.docker_modules/alntools/dd96682/docker_init.sh
--- a/src/.docker_modules/bamutils/1.0.14/docker_init.sh
+++ b/src/.docker_modules/bamutils/1.0.14/docker_init.sh
--- a/src/.docker_modules/bcftools/1.7/docker_init.sh
+++ b/src/.docker_modules/bcftools/1.7/docker_init.sh
--- a/src/.docker_modules/bedops/2.4.39/docker_init.sh
+++ b/src/.docker_modules/bedops/2.4.39/docker_init.sh
--- a/src/.docker_modules/bedtools/2.25.0/docker_init.sh
+++ b/src/.docker_modules/bedtools/2.25.0/docker_init.sh
--- a/src/.docker_modules/bedtools/2.30.0/docker_init.sh
+++ b/src/.docker_modules/bedtools/2.30.0/docker_init.sh
--- a/src/.docker_modules/bioawk/1.0/docker_init.sh
+++ b/src/.docker_modules/bioawk/1.0/docker_init.sh
--- a/src/.docker_modules/bowtie/1.2.2/docker_init.sh
+++ b/src/.docker_modules/bowtie/1.2.2/docker_init.sh
--- a/src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh
+++ b/src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh
--- a/src/.docker_modules/bwa/0.7.17/docker_init.sh
+++ b/src/.docker_modules/bwa/0.7.17/docker_init.sh
--- a/src/.docker_modules/canu/1.6/docker_init.sh
+++ b/src/.docker_modules/canu/1.6/docker_init.sh
--- a/src/.docker_modules/crossmap/0.4.1/docker_init.sh
+++ b/src/.docker_modules/crossmap/0.4.1/docker_init.sh
--- a/src/.docker_modules/cutadapt/1.14/docker_init.sh
+++ b/src/.docker_modules/cutadapt/1.14/docker_init.sh
--- a/src/.docker_modules/cutadapt/1.15/docker_init.sh
+++ b/src/.docker_modules/cutadapt/1.15/docker_init.sh
--- a/src/.docker_modules/cutadapt/2.1/docker_init.sh
+++ b/src/.docker_modules/cutadapt/2.1/docker_init.sh
--- a/src/.docker_modules/deeptools/3.0.2/docker_init.sh
+++ b/src/.docker_modules/deeptools/3.0.2/docker_init.sh
--- a/src/.docker_modules/deeptools/3.1.1/docker_init.sh
+++ b/src/.docker_modules/deeptools/3.1.1/docker_init.sh
--- a/src/.docker_modules/deeptools/3.5.0/docker_init.sh
+++ b/src/.docker_modules/deeptools/3.5.0/docker_init.sh
--- a/src/.docker_modules/deeptools/3.5.1/docker_init.sh
+++ b/src/.docker_modules/deeptools/3.5.1/docker_init.sh