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Verified Commit 6b6d059a authored by Laurent Modolo's avatar Laurent Modolo
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example_marseq.nf: cosmetic changes

parent 8d92ac19
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......@@ -62,10 +62,26 @@ channel
workflow {
adaptor_removal(fastq_files)
if (params.workflow_type == "classic") {
index_fasta(fasta_files, gtf_files)
count(index_fasta.out.index, adaptor_removal.out.fastq, index_fasta.out.t2g, whitelist_files, config_files)
index_fasta(
fasta_files,
gtf_files
)
count(
index_fasta.out.index,
adaptor_removal.out.fastq,
index_fasta.out.t2g, whitelist_files,config_files
)
} else {
index_fasta_velocity(fasta_files, gtf_files)
count_velocity(index_fasta_velocity.out.index, adaptor_removal.out.fastq, index_fasta_velocity.out.t2g, whitelist_files, config_files)
index_fasta_velocity(
fasta_files,
gtf_files
)
count_velocity(
index_fasta_velocity.out.index,
adaptor_removal.out.fastq,
index_fasta_velocity.out.t2g,
whitelist_files,
config_files
)
}
}
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