diff --git a/src/example_marseq.nf b/src/example_marseq.nf index 4be90c78ffc6570ad3725eceb7ad1ffb6e8bfe70..821ebd99d45e9810b2a5fc3546e720d417666750 100644 --- a/src/example_marseq.nf +++ b/src/example_marseq.nf @@ -62,10 +62,26 @@ channel workflow { adaptor_removal(fastq_files) if (params.workflow_type == "classic") { - index_fasta(fasta_files, gtf_files) - count(index_fasta.out.index, adaptor_removal.out.fastq, index_fasta.out.t2g, whitelist_files, config_files) + index_fasta( + fasta_files, + gtf_files + ) + count( + index_fasta.out.index, + adaptor_removal.out.fastq, + index_fasta.out.t2g, whitelist_files,config_files + ) } else { - index_fasta_velocity(fasta_files, gtf_files) - count_velocity(index_fasta_velocity.out.index, adaptor_removal.out.fastq, index_fasta_velocity.out.t2g, whitelist_files, config_files) + index_fasta_velocity( + fasta_files, + gtf_files + ) + count_velocity( + index_fasta_velocity.out.index, + adaptor_removal.out.fastq, + index_fasta_velocity.out.t2g, + whitelist_files, + config_files + ) } }