Commits · 0634832aebd5a8de520acedee8a0f35b888b2706 · Xavier Grand / ChIPster

Oct 11, 2021
- modification complete avec Nicolas, intégration de tous les paramètre du... · 50014602
  Xavier Grand authored 3 years ago
  
  modification complete avec Nicolas, intégration de tous les paramètre du fichier de config dans les channels
  50014602
Jun 04, 2021
- cleanup DSL1 test.sh · 2150d981
  Laurent Modolo authored 3 years ago
  
  2150d981
- switcth to nextflow DSL2 · cc2d49f6
  Laurent Modolo authored 3 years ago
  
  cc2d49f6
Apr 19, 2021
- fastp: fix json output file · ec397a7f
  Laurent Modolo authored 3 years ago
  
  ec397a7f
Apr 16, 2021
- nf_modules: fix paired-single end handling · 481dc0d4
  Laurent Modolo authored 3 years ago
  
  481dc0d4
Apr 15, 2021
- fastp: fix accel_s1plus protocol · 8e1543d2
  Laurent Modolo authored 3 years ago
  
  8e1543d2
Apr 14, 2021
- fastp: update accel_s1plus protocol · 1f72b2c4
  Laurent Modolo authored 3 years ago
  
  1f72b2c4
- fastp: fix variable name in fastp_accel_1splus · 9c9cf82d
  Laurent Modolo authored 3 years ago
  
  9c9cf82d
- fastp: update fastp to match CONTRIBUTING.md · 2924d6ef
  Laurent Modolo authored 3 years ago
  
  2924d6ef
Apr 13, 2021
- fastp: add --interleaved_in for 2nd fastp for accel_s1plus · 8ef138b4
  Laurent Modolo authored 3 years ago
  
  8ef138b4
- fastp: update accel_1splus protocol · d2e7b69c
  Laurent Modolo authored 3 years ago
  
  d2e7b69c
- fastp: add accel_1splus protocol trimming with a switch · c98150b9
  Laurent Modolo authored 3 years ago
  
  c98150b9
Apr 08, 2021
- fastp: add params.fastp · e8c33f90
  Laurent Modolo authored 3 years ago
  
  e8c33f90
Mar 12, 2021
- fastp: test paired_end & single_end process · 720b1977
  Laurent Modolo authored 4 years ago
  
  720b1977
Feb 18, 2021
- fastp: fix output name to be catched by multiqc · b5a93ee3
  Laurent Modolo authored 4 years ago
  
  b5a93ee3
- fastp: fix output to capture json files · ad8474e6
  Laurent Modolo authored 4 years ago
  
  ad8474e6
- fastp: add json output for multiqc · 9cc57a97
  Laurent Modolo authored 4 years ago
  
  9cc57a97
- fastp: add fastp 0.20.1 · 5b444810
  Laurent Modolo authored 4 years ago
  
  5b444810
Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 4 years ago
  
  87c79ae2
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 4 years ago
  
  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 4 years ago
  
  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 4 years ago
  
  c116038b
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
  32312418
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
  cbe80128
Nov 06, 2019
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
  3ced2125
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
  f8fe5b84
May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
  78189351
May 17, 2019
- config files: updater monocore queues for psmn · 21a8f8b8
  Laurent Modolo authored 5 years ago
  
  21a8f8b8
May 15, 2019
- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 5 years ago
  
  565ffad2
May 07, 2019
- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored 5 years ago
  
  99eb8705
Apr 16, 2019
- fastp: add in2p3 config · f3d19ff9
  Laurent Modolo authored 5 years ago
  
  f3d19ff9
- change .sif to .img for singularity img · a972f993
  Laurent Modolo authored 5 years ago
  
  a972f993
Mar 26, 2019
- fastp: add nf modules files · 0d0e5587
  Laurent Modolo authored 5 years ago
  
  0d0e5587