Skip to content
Snippets Groups Projects
Verified Commit ec397a7f authored by Laurent Modolo's avatar Laurent Modolo
Browse files

fastp: fix json output file

parent df5c19a1
No related branches found
No related tags found
No related merge requests found
......@@ -39,9 +39,9 @@ process fastp_default {
tuple val(file_id), path(reads)
output:
tuple val(file_id), path("*.fastq.gz"), emit: fastq
tuple val(file_id), path("*.html"), emit: html
tuple val(file_id), path("*.json"), emit: report
tuple val(file_id), path("*_trim.fastq.gz"), emit: fastq
tuple val(file_id), path("${file_prefix}.html"), emit: html
tuple val(file_id), path("${file_prefix}_fastp.json"), emit: report
script:
if (file_id instanceof List){
......@@ -91,9 +91,9 @@ process fastp_accel_1splus {
tuple val(file_id), path(reads)
output:
tuple val(file_id), path("*.fastq.gz"), emit: fastq
tuple val(file_id), path("*.html"), emit: html
tuple val(file_id), path("*.json"), emit: report
tuple val(file_id), path("*_trim.fastq.gz"), emit: fastq
tuple val(file_id), path("${file_prefix}.html"), emit: html
tuple val(file_id), path("${file_prefix}_fastp.json"), emit: report
script:
if (file_id instanceof List){
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment