Commits · cbd23ab657eb28ecb515824d97fadf5144eed196 · nfontrod / nextflow · GitLab

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Mar 01, 2019
- Bowtie2: add singularity to nf files · cbd23ab6
  Laurent Modolo authored 6 years ago
  
  cbd23ab6
- Bowtie: add singularity to nf files · 11a52fbc
  Laurent Modolo authored 6 years ago
  
  11a52fbc
- BWA: add singularity to nf files · a494361b
  Laurent Modolo authored 6 years ago
  
  a494361b
- bedtools: update singularity path · edd04712
  Laurent Modolo authored 6 years ago
  
  edd04712
- UrQt: update singularity path · 1bba0da1
  Laurent Modolo authored 6 years ago
  
  1bba0da1
- sambamba: fix singularity path · 3dc1c869
  Laurent Modolo authored 6 years ago
  
  3dc1c869
- BEDtools: add singularity to nf files · f1a4275c
  Laurent Modolo authored 6 years ago
  
  f1a4275c
- UrQt: add singularity tests · 9fb75825
  Laurent Modolo authored 6 years ago
  
  9fb75825
- UrQt: switch cpus config from .nf to .config · c8902c46
  Laurent Modolo authored 6 years ago
  
  c8902c46
- UrQt: add singularity config and test · 2901dd9f
  Laurent Modolo authored 6 years ago
  
  2901dd9f
Feb 20, 2019
- cudatapt: add cutadapt v1.15 for docker and nf · 93f2be99
  Laurent Modolo authored 6 years ago
  
  93f2be99
Dec 20, 2018
- SAMtools: Dockerfile ubuntu -> alpine · 86ff02d6
  Laurent Modolo authored 6 years ago
  
  86ff02d6
- deepTools: fix typo in bam_to_bigwig.nf · 7f9cd94b
  Laurent Modolo authored 6 years ago
  
  7f9cd94b
- deepTools: add test for 2 bam files · d14e7205
  Laurent Modolo authored 6 years ago
  
  d14e7205
Dec 19, 2018
- deepTools: add plot_profile module · 3fede7c6
  Laurent Modolo authored 6 years ago
  
  3fede7c6
- deepTools: add compute_matrix module · b25a6418
  Laurent Modolo authored 6 years ago
  
  b25a6418
- deepTools: tests.sh for compute_matrix · 0a98c166
  Laurent Modolo authored 6 years ago
  
  0a98c166
- deepTools: bam_to_bigwig working · a095fa9d
  Laurent Modolo authored 6 years ago
  
  a095fa9d
- deepTools: add config file for bam_to_bigwig · 543e35a0
  Laurent Modolo authored 6 years ago
  
  543e35a0
- nf_modules: fix withname -> withName in config files · 85a68216
  Laurent Modolo authored 6 years ago
  
  85a68216
Oct 26, 2018
- nf modules config: remove cpus info · 03f44eef
  Laurent Modolo authored 6 years ago
  
  03f44eef
Oct 24, 2018
- add clusterOption for psmn to all config files · e057e9a1
  Laurent Modolo authored 6 years ago
  
  e057e9a1
Oct 23, 2018
- SAMtools: nf update psmn config · 0d23365b
  Laurent Modolo authored 6 years ago
  
  0d23365b
- FastQC: nf update psmn config · 5760392e
  Laurent Modolo authored 6 years ago
  
  5760392e
- samblaster: nf update psmn config · eb58b93f
  Laurent Modolo authored 6 years ago
  
  eb58b93f
- SRAtoolkit: nf update psmn config · 8b66dd73
  Laurent Modolo authored 6 years ago
  
  8b66dd73
- HTSeq: nf update psmn config · 639c47ed
  Laurent Modolo authored 6 years ago
  
  639c47ed
- Bowtie: nf update psmn config · 221bd018
  Laurent Modolo authored 6 years ago
  
  221bd018
- BWA: nf update psmn config · 46c1f9f2
  Laurent Modolo authored 6 years ago
  
  46c1f9f2
- sambamba: nf update psmn config · 14164fee
  Laurent Modolo authored 6 years ago
  
  14164fee
- Bowtie2: nf update config for psmn · 2973fe82
  Laurent Modolo authored 6 years ago
  
  2973fe82
- RSEM: nf update indexing config for psmn · c95c7e0c
  Laurent Modolo authored 6 years ago
  
  c95c7e0c
- nf module: update executor from psmn to sge · 9fdc0424
  Laurent Modolo authored 6 years ago
  
  9fdc0424
- MultiQC: nf update psmn config · 1900998a
  Laurent Modolo authored 6 years ago
  
  1900998a
- RSEM: nf update psmn config · 68aa07a8
  Laurent Modolo authored 6 years ago
  
  68aa07a8
- UrQt: cleanup old config · c34e43a8
  Laurent Modolo authored 6 years ago
  
  c34e43a8
- MUSIC: update psmn config · 86a3e164
  Laurent Modolo authored 6 years ago
  
  86a3e164
- nf config file update nf syntax for process · 3e2c83f3
  Laurent Modolo authored 6 years ago
  
  3e2c83f3
- nf config: rename sge to psmn · fa486dc6
  Laurent Modolo authored 6 years ago
  
  fa486dc6
- Kallisto: update nf config for PSMN · 35e3593b
  Laurent Modolo authored 6 years ago
  
  35e3593b