Commits · 1d82bf7cdd5cd48ce25985c14bd37f9027c253cb · nfontrod / nextflow · GitLab

Snippets Groups Projects

Feb 05, 2019
- deepTools: add ps to Dockerfile · 1d82bf7c
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  1d82bf7c
- deepTools: Dockerfile add v3.1.1 · 6feaf7ac
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  6feaf7ac
- ucsc: install app in docker ... · 8e0939bc
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  8e0939bc
- ucsc: fix Dockerfile · af991e09
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  af991e09
- deepTools: Dockerfile fix deepTools (ubuntu -> debian) · 5ad5735c
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  5ad5735c
- UCSC: add Dockerfile · 6fb743f5
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  6fb743f5
Dec 21, 2018
- ucsc: add docker · 504d7682
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  504d7682
- switch SAMtools to alpine · 2bb534c5
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  2bb534c5
Dec 20, 2018
- SAMtools: Dockerfile ubuntu -> alpine · 86ff02d6
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  86ff02d6
- deepTools: fix typo in bam_to_bigwig.nf · 7f9cd94b
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  7f9cd94b
- deepTools: add test for 2 bam files · d14e7205
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  d14e7205
Dec 19, 2018
- deepTools: add plot_profile module · 3fede7c6
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  3fede7c6
- deepTools: add compute_matrix module · b25a6418
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  b25a6418
- deepTools: tests.sh for compute_matrix · 0a98c166
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  0a98c166
- deepTools: bam_to_bigwig working · a095fa9d
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  a095fa9d
- deepTools: add config file for bam_to_bigwig · 543e35a0
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  543e35a0
- nf_modules: fix withname -> withName in config files · 85a68216
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  85a68216
Dec 14, 2018
- cutadapt: dockerfile add bash... · 03bee3cf
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  03bee3cf
- cutadapt:1.14: Dockerfile ubuntu -> alpine · 76ee441f
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  76ee441f
Dec 13, 2018
- cutadapt: update docker file · 50f9fbf7
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  50f9fbf7
Oct 26, 2018
- nf modules config: remove cpus info · 03f44eef
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  03f44eef
Oct 24, 2018
- add clusterOption for psmn to all config files · e057e9a1
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  e057e9a1
- training_dataset.config: update psmn config · 9a24a86d
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  9a24a86d
Oct 23, 2018
- SAMtools: nf update psmn config · 0d23365b
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  0d23365b
- FastQC: nf update psmn config · 5760392e
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  5760392e
- samblaster: nf update psmn config · eb58b93f
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  eb58b93f
- SRAtoolkit: nf update psmn config · 8b66dd73
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  8b66dd73
- HTSeq: nf update psmn config · 639c47ed
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  639c47ed
- Bowtie: nf update psmn config · 221bd018
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  221bd018
- BWA: nf update psmn config · 46c1f9f2
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  46c1f9f2
- sambamba: nf update psmn config · 14164fee
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  14164fee
- Bowtie2: nf update config for psmn · 2973fe82
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  2973fe82
- RSEM: nf update indexing config for psmn · c95c7e0c
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  c95c7e0c
- nf module: update executor from psmn to sge · 9fdc0424
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  9fdc0424
- MultiQC: nf update psmn config · 1900998a
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  1900998a
- RSEM: nf update psmn config · 68aa07a8
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  68aa07a8
- UrQt: cleanup old config · c34e43a8
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  c34e43a8
- MUSIC: update psmn config · 86a3e164
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  86a3e164
- nf config file update nf syntax for process · 3e2c83f3
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  3e2c83f3
- change occurences of sge into psmn · cdb93acd
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  cdb93acd