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LBMC
ReGArDS
ChIA-PET_network
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af8ef9029d028291de34ac1270992d5739f1adb9
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non-b_dev
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chia-pet_network
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authors
fmortreu
fmortreu
hpolvech
hpolvech
Laurent Modolo
lmodolo
Matthaus Sirvent
msirvent
nfontrod
nfontrod
5 authors
Jul 10, 2020
src/find_interaction_cluster/sf_and_communities.py: script allowing to check...
· af8ef902
nfontrod
authored
4 years ago
af8ef902
Jul 06, 2020
src/find_interaction_cluster/community_finder.py: fix community_finder function
· dea5098c
nfontrod
authored
4 years ago
dea5098c
src/find_interaction_cluster/__main__.py: display hipMCL at info level
· 8929cc2b
nfontrod
authored
4 years ago
8929cc2b
src/find_interaction_cluster/install_hipMCL.py: display logging message when...
· 46361dc1
nfontrod
authored
4 years ago
46361dc1
src/find_interaction_cluster/__main__.py: launch installation of hipMCL before...
· c31e354d
nfontrod
authored
4 years ago
c31e354d
src/find_interaction_cluster/community_finder.py: find communities using hipMCL method
· 68c96e9a
nfontrod
authored
4 years ago
68c96e9a
src/find_interaction_cluster/config.py: creation of three new variables...
· cf1f8a3b
nfontrod
authored
4 years ago
cf1f8a3b
src/find_interaction_cluster/install_hipMCL.py: Creation of a script to install and compile hipmcl
· 65af81dd
nfontrod
authored
4 years ago
65af81dd
Jul 03, 2020
src/nt_composition/__main__.py: modification of launcher function to either...
· fc58b721
nfontrod
authored
4 years ago
fc58b721
src/nt_composition/config.py: modification of get_density_file by adding a new...
· a5e99652
nfontrod
authored
4 years ago
a5e99652
src/nt_composition/distance.py: script to check whether the co-localised exons...
· b4c6b30c
nfontrod
authored
4 years ago
b4c6b30c
src/fig_utils/: modules to add statistical annoation on figure
· f8d78001
nfontrod
authored
4 years ago
f8d78001
Jul 01, 2020
src/nt_composition/__main__.py: add the new parameter compute_mean
· df35dfe6
nfontrod
authored
4 years ago
df35dfe6
src/nt_composition/make_nt_correlation.py: creation of new functions to create...
· fdc6a900
nfontrod
authored
4 years ago
fdc6a900
Jun 30, 2020
src/find_interaction_cluster/__main__.py: modification of main_function by...
· ed782af5
nfontrod
authored
4 years ago
ed782af5
src/find_interaction_cluster/config.py: modification of get_community_file function
· d282c5a6
nfontrod
authored
4 years ago
d282c5a6
src/find_interaction_cluster/community_finder.py: creation of...
· 4eeae6f6
nfontrod
authored
4 years ago
4eeae6f6
Jun 26, 2020
src/find_interaction_cluster/__main__.py: modification of main function to use...
· a2db1464
nfontrod
authored
4 years ago
a2db1464
src/find_interaction_cluster/config.py: add new variables community_folder...
· 5caad347
nfontrod
authored
4 years ago
5caad347
src/find_interaction_cluster/community_finder.py: creation of lighten_color...
· 39d972e6
nfontrod
authored
4 years ago
39d972e6
src/nt_composition/make_nt_correlation.py: fix get_select_addition function
· edef0215
nfontrod
authored
4 years ago
edef0215
Jun 25, 2020
src/find_interaction_cluster/community_finder.py: Script that seach...
· 8ffc7696
nfontrod
authored
4 years ago
8ffc7696
src/find_interaction_cluster/__main__.py: launcher to execute the scripts in...
· df74edc7
nfontrod
authored
4 years ago
df74edc7
src/find_interaction_cluster/config.py: creation of a config file that store...
· ce79ef57
nfontrod
authored
4 years ago
ce79ef57
src/find_interaction_cluster/__init__.py: creation of an init file
· 9c0d3e61
nfontrod
authored
4 years ago
9c0d3e61
src/nt_composition/make_nt_correlation.py: creation of get_select_addition and...
· 6f741c56
nfontrod
authored
4 years ago
6f741c56
Jun 23, 2020
src/nt_composition/make_nt_correlation.py: add the parameter ft_type when...
· 4479c605
nfontrod
authored
4 years ago
4479c605
src/nt_composition/config.py: Add a parameter ft_type in get_weight_folder
· 906f1470
nfontrod
authored
4 years ago
906f1470
Jun 19, 2020
src/figures_utils/__main__.py: launch the script in exons_interactions.py
· d83855e0
nfontrod
authored
4 years ago
d83855e0
get_colocalized_exons fixed, code refactoring and tests addition
· c8b4bce4
nfontrod
authored
4 years ago
c8b4bce4
src/nt_composition/make_nt_correlation.py: creation of a...
· 927729b7
nfontrod
authored
4 years ago
927729b7
Merge branch 'master' of gitlab_lbmc:LBMC/regards/chia-pet_network into dev
· 092aac72
nfontrod
authored
4 years ago
092aac72
.gitignore: files to ignore
· 3278df0b
nfontrod
authored
4 years ago
3278df0b
src/nt_composition/__main__.py: add the parameter same_gene to gets_interaction_number
· 096c1457
nfontrod
authored
4 years ago
096c1457
src/nt_composition/make_nt_correlation.py: modification of...
· 30eb71fa
nfontrod
authored
4 years ago
30eb71fa
src/nt_composition/get_projects_interaction.py: add a new parameter, same_gene...
· d1232a66
nfontrod
authored
4 years ago
d1232a66
Jun 18, 2020
config_figures.py: initial commit
· 1fa78f19
alapendr
authored
4 years ago
1fa78f19
exons_interactions.py: initial commit
· 98ceeaa7
alapendr
authored
4 years ago
98ceeaa7
src/nt_composition/make_nt_correlation.py src/nt_composition/__main__.py:...
· e2d22cc1
nfontrod
authored
4 years ago
e2d22cc1
src/nt_composition/make_nt_correlation.py src/nt_composition/__main__.py: Add...
· d37a1c7d
nfontrod
authored
4 years ago
d37a1c7d
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