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Commit c31e354d authored by nfontrod's avatar nfontrod
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src/find_interaction_cluster/__main__.py: launch installation of hipMCL before...

src/find_interaction_cluster/__main__.py: launch installation of hipMCL before searching for communities
parent 68c96e9a
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...@@ -11,6 +11,7 @@ from .community_finder import multiple_community_launcher ...@@ -11,6 +11,7 @@ from .community_finder import multiple_community_launcher
import lazyparser as lp import lazyparser as lp
from .config import ConfigGraph from .config import ConfigGraph
from typing import List from typing import List
from .install_hipMCL import install_hipmcl
@lp.parse @lp.parse
...@@ -30,10 +31,12 @@ def launcher(weight: List[int] = (1), ...@@ -30,10 +31,12 @@ def launcher(weight: List[int] = (1),
seen in `global_weight` project are taken into account (default 0) seen in `global_weight` project are taken into account (default 0)
:param project: The name of the project of interest (default GSM1517081) :param project: The name of the project of interest (default GSM1517081)
:param same_gene: Say if we consider as co-localised, exons within the \ :param same_gene: Say if we consider as co-localised, exons within the \
same gene (True) or not (False) (default False) same gene (True) or not (False) (default True)
:param html_fig: True to display the html figure (default False). :param html_fig: True to display the html figure (default False).
:param logging_level: The level of data to display (default 'DISABLE') :param logging_level: The level of data to display (default 'DISABLE')
""" """
if not ConfigGraph.get_hipmcl_prog().is_file():
install_hipmcl()
multiple_community_launcher(ps, weight, global_weight, same_gene, html_fig, multiple_community_launcher(ps, weight, global_weight, same_gene, html_fig,
logging_level) logging_level)
......
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