src/find_interaction_cluster/config.py: creation of a config file that store...

src/find_interaction_cluster/config.py: creation of a config file that store every variable used in the submodule src/find_interaction_cluster

src/find_interaction_cluster/config.py

+#!/usr/bin/env python3
+
+# -*- coding: UTF-8 -*-
+
+"""
+Description: Configuration folder
+"""
+
+from ..db_utils.config import Config
+
+
+def get_community_file(project: str, weight: int, global_weight: int,
+                       same_gene: bool, is_fig: bool = False):
+    """
+    Get the output file of interest.
+
+    :param project: Name of the project of interest
+    :param weight: The minimum weight of interaction to consider
+    :param global_weight: The global weight to consider. if \
+    the global weight is equal to 0 then then density figure are calculated \
+    by project, else all projet are merge together and the interaction \
+    seen in `global_weight` project are taken into account
+    :param same_gene: Say if we consider as co-localised exon within the \
+    same gene
+    :return: The filename of interest
+    """
+    folder = ConfigGraph.output_folder
+    folder.mkdir(exist_ok=True, parents=True)
+    if is_fig:
+        ext = '.html'
+    else:
+        ext = '.txt'
+    if global_weight != 0:
+        project = f"global-weight-{global_weight}"
+    return folder / f"{project}_weight-{weight}_same_gene-{same_gene}{ext}"
+
+
+class ConfigGraph:
+    """
+    Class containing all the variables that will be used in this submodule
+    """
+    data = Config.data
+    db_file = Config.db_file
+    results = Config.results
+    output_folder = results / 'community_of_co-localized-exons'
+    get_community_file = get_community_file