src/find_interaction_cluster/install_hipMCL.py: Creation of a script to install and compile hipmcl

src/find_interaction_cluster/install_hipMCL.py

+#!/usr/bin/env python3
+
+# -*- coding: UTF-8 -*-
+
+"""
+Description: Download and install hipMCL
+"""
+
+import subprocess as sp
+from pathlib import Path
+from .config import ConfigGraph
+
+
+def download_hipmcl(outfile: Path):
+    """
+    Download the hipmlc script.
+
+    :param outfile: The output folder where hipMCL algorithm will \
+    be downloaded.
+    :return: The folder containing hipMCL file
+    """
+    cmd = f"curl https://bitbucket.org/azadcse/hipmcl/get/6fa32bbcb4bc.zip " \
+          f"--output {outfile}"
+    sp.check_call(cmd, shell=True, stderr=sp.STDOUT)
+    cmd2 = f"unzip {outfile} -d {ConfigGraph.data}"
+    sp.check_call(cmd2, shell=True, stderr=sp.STDOUT)
+
+
+def compilation(hip_folder: Path):
+    """
+    Compile hip_folder.
+
+    :param hip_folder: Folder with hipfile
+    """
+    cmd = f"ln -s {hip_folder}/makefile-mac {hip_folder}/Makefile && " \
+          f"(cd {hip_folder} && make hipmcl)"
+    sp.check_call(cmd, shell=True, stderr=sp.STDOUT)
+
+
+def install_hipmcl():
+    """
+    INstall hipMCL.
+    """
+    download_hipmcl(ConfigGraph.hip_zip)
+    compilation(ConfigGraph.get_hip_folder())
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