Commits · ceca3ce0513a67370ce258f6b1d2f827cc04329b · LBMC / nextflow

Mar 30, 2023
- nextflow.config: add bind option for the psmn · ceca3ce0
  Laurent Modolo authored 1 year ago
  
  ceca3ce0
Feb 20, 2023

Updates to src/nextflow.config · ffd43025

Brice Letcher authored 2 years ago

* Restore `charliecloud` prefixes
* Remove `--bind`ing as nextflow takes care of it
* Use `queue` not `clusterOptions` for Lake partition
* Use `slurm` executor always under `process`

ffd43025

Feb 03, 2023
- src/nextflow.config: update psmn profile · 9b592f1d
  Laurent Modolo authored 2 years ago
  
  9b592f1d
Oct 27, 2022
- src/nextflow.config: fix comment style for licence · 086a9b40
  Laurent Modolo authored 2 years ago
  
  086a9b40
Oct 19, 2022
- update licencing informations · 29a44149
  Laurent Modolo authored 2 years ago
  
  29a44149
- charliecloud change psmn img path · 0f09b334
  Laurent Modolo authored 2 years ago
  
  0f09b334
Oct 18, 2022
- add slurm/charlicloud config for psmn debian11 · 6bc458b5
  Laurent Modolo authored 2 years ago
  
  6bc458b5
- switch from charliecloud to podman · e79307f2
  Laurent Modolo authored 2 years ago
  
  e79307f2
Oct 17, 2022
- add charlicloud conf · 59e74d63
  Laurent Modolo authored 2 years ago
  
  59e74d63
May 12, 2022
- working config and daemon job for in2p3 · 8b7e3616
  Laurent Modolo authored 2 years ago
  
  8b7e3616
- nextflow.config: change ccin2p3 to slurm · e0b48dea
  Laurent Modolo authored 2 years ago
  
  e0b48dea
Sep 29, 2021
- src/nextflow.config: add podman profile · 92896b97
  Laurent Modolo authored 3 years ago
  
  92896b97
Apr 15, 2021
- nextflow.config: change singualrity cacheDir for profile psmn · a7b03ba6
  Laurent Modolo authored 3 years ago
  
  a7b03ba6
Apr 13, 2021
- nextflow.config: add small_mem label · 47556f87
  Laurent Modolo authored 3 years ago
  
  47556f87
Mar 16, 2021
- nexflow.config: rm sratch config for psmn · 22495331
  Laurent Modolo authored 4 years ago
  
  22495331
Mar 05, 2021
- nextflow.config: remove space in memory declaration · 799be6b8
  Laurent Modolo authored 4 years ago
  
  799be6b8
Feb 20, 2021
- nextflow.config:improove pmsn 32 cpus queue · 175a472e
  Laurent Modolo authored 4 years ago
  
  175a472e
Feb 18, 2021
- nextflow.config: fix psmn monocpu cmd · 4b33241e
  Laurent Modolo authored 4 years ago
  
  4b33241e
- nextflow.config: add 192 monointerl queue for psmn · e7d4fec1
  Laurent Modolo authored 4 years ago
  
  e7d4fec1
Feb 17, 2021
- nextflow.config: fix errorStrategy · 8fe24a84
  Laurent Modolo authored 4 years ago
  
  8fe24a84
- nextflow.config: simplify errorStrategy for computing grid · eed28334
  Laurent Modolo authored 4 years ago
  
  eed28334
- nextflow.config: change errorStrategy · 04fa21c5
  Laurent Modolo authored 4 years ago
  
  04fa21c5
Feb 04, 2021
- nextfow.config: update base default version · cfd71a7d
  Laurent Modolo authored 4 years ago
  
  cfd71a7d
Jan 27, 2021
- nextflow.config: add memory limits · ebecfb6d
  Laurent Modolo authored 4 years ago
  
  ebecfb6d
Jan 22, 2021
- nextflow.config: change queue list for psmn · 629de1ab
  Laurent Modolo authored 4 years ago
  
  629de1ab
- nextflow.config: add missing space :40 · 924256a1
  Laurent Modolo authored 4 years ago
  
  924256a1
Jan 20, 2021
- nextflow.config: add generic config file for module use · d3176121
  Laurent Modolo authored 4 years ago
  
  d3176121
Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 4 years ago
  
  87c79ae2
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 4 years ago
  
  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 4 years ago
  
  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 4 years ago
  
  c116038b
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
  32312418
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
  cbe80128
Nov 06, 2019
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
  3ced2125
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
  f8fe5b84