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Verified Commit 47556f87 authored by Laurent Modolo's avatar Laurent Modolo
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nextflow.config: add small_mem label

parent 3e09b513
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...@@ -25,6 +25,14 @@ profiles { ...@@ -25,6 +25,14 @@ profiles {
withLabel: big_mem_multi_cpus { withLabel: big_mem_multi_cpus {
cpus = 4 cpus = 4
} }
withLabel: small_mem_mono_cpus {
cpus = 1
memory = '2GB'
}
withLabel: small_mem_multi_cpus {
cpus = 4
memory = '2GB'
}
} }
} }
singularity { singularity {
...@@ -39,6 +47,14 @@ profiles { ...@@ -39,6 +47,14 @@ profiles {
withLabel: big_mem_multi_cpus { withLabel: big_mem_multi_cpus {
cpus = 4 cpus = 4
} }
withLabel: small_mem_mono_cpus {
cpus = 1
memory = '2GB'
}
withLabel: small_mem_multi_cpus {
cpus = 4
memory = '2GB'
}
} }
} }
psmn { psmn {
...@@ -66,6 +82,24 @@ profiles { ...@@ -66,6 +82,24 @@ profiles {
penv = "openmp32" penv = "openmp32"
} }
withLabel: small_mem_mono_cpus {
executor = "sge"
clusterOptions = "-cwd -V"
cpus = 1
memory = "16GB"
time = "12h"
queue = "monointeldeb128,monointeldeb192"
}
withLabel: small_mem_multi_cpus {
executor = "sge"
clusterOptions = "-cwd -V"
cpus = 32
memory = "16GB"
time = "24h"
queue = "CLG*,SLG*,Epyc*"
penv = "openmp32"
}
} }
} }
ccin2p3 { ccin2p3 {
...@@ -96,6 +130,27 @@ profiles { ...@@ -96,6 +130,27 @@ profiles {
memory = "8GB" memory = "8GB"
queue = "huge" queue = "huge"
} }
withLabel: small_mem_mono_cpus {
scratch = true
stageInMode = "copy"
stageOutMode = "rsync"
executor = "sge"
clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
cpus = 1
memory = "8GB"
queue = "huge"
}
withLabel: small_mem_multi_cpus {
container = "lbmc/urqt:d62c1f8"
scratch = true
stageInMode = "copy"
stageOutMode = "rsync"
executor = "sge"
clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
cpus = 1
memory = "8GB"
queue = "huge"
}
} }
} }
} }
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