Commits · bf418ede64ada407d14a9a9d0c5c813df69d465d · LBMC / nextflow

May 02, 2019
- nextflow: update in2p3 test for demon queue · bf418ede
  Laurent Modolo authored 5 years ago
  
  bf418ede
Apr 16, 2019
- kallisto: try to remove option for in2p3 qsub · 6a9d1f73
  Laurent Modolo authored 6 years ago
  
  6a9d1f73
- kallisto: index.config test mc_huge for indexing · 3cb0f062
  Laurent Modolo authored 6 years ago
  
  3cb0f062
- kallisto: indexing.config add queue for in2p3 · aa5dbf3d
  Laurent Modolo authored 6 years ago
  
  aa5dbf3d
- kallisto: add ccin2p3_conda profile for indexing · e069611c
  Laurent Modolo authored 6 years ago
  
  e069611c
- urqt: add in2p3 config · 950bd41f
  Laurent Modolo authored 6 years ago
  
  950bd41f
- sratoolkit: add in2p3 config · e336cd2a
  Laurent Modolo authored 6 years ago
  
  e336cd2a
- samtools: add in2p3 config · 9d8b2010
  Laurent Modolo authored 6 years ago
  
  9d8b2010
- samblaster: add in2p3 config · 7505299c
  Laurent Modolo authored 6 years ago
  
  7505299c
- sambamba: add in2p3 config · a0f7c6dc
  Laurent Modolo authored 6 years ago
  
  a0f7c6dc
- rsem: add in2p3 config · cae8221a
  Laurent Modolo authored 6 years ago
  
  cae8221a
- music: add in2p3 config · 520f4e9f
  Laurent Modolo authored 6 years ago
  
  520f4e9f
- multiqc: add in2p3 config · f60953e1
  Laurent Modolo authored 6 years ago
  
  f60953e1
- macs2: add in2p3 config # Please enter the commit message for your changes. Lines starting · abd775c2
  Laurent Modolo authored 6 years ago
  
  abd775c2
- htseq: add in2p3 config · 7e5b25f3
  Laurent Modolo authored 6 years ago
  
  7e5b25f3
- hisat2: add in2p3 config · eeac2fbf
  Laurent Modolo authored 6 years ago
  
  eeac2fbf
- fastqc: add in2p3 config · fecdfd5a
  Laurent Modolo authored 6 years ago
  
  fecdfd5a
- fastp: add in2p3 config · f3d19ff9
  Laurent Modolo authored 6 years ago
  
  f3d19ff9
- deeptools: add in2p3 config · 1e4f4848
  Laurent Modolo authored 6 years ago
  
  1e4f4848
- cutadapt: add in2p3 config · e573e51f
  Laurent Modolo authored 6 years ago
  
  e573e51f
- bwa: add in2p3 config · 9aa69834
  Laurent Modolo authored 6 years ago
  
  9aa69834
- bowtie2: add in2p3 config · 5b50ecea
  Laurent Modolo authored 6 years ago
  
  5b50ecea
- bowtie: add in2p3 config · 7fc46b3c
  Laurent Modolo authored 6 years ago
  
  7fc46b3c
- bedtools: update in2p3 config · a567c6aa
  Laurent Modolo authored 6 years ago
  
  a567c6aa
- kallisto: add in2p3 config · e16a1a9f
  Laurent Modolo authored 6 years ago
  
  e16a1a9f
- change .sif to .img for singularity img · a972f993
  Laurent Modolo authored 6 years ago
  
  a972f993
Apr 12, 2019
- kallisto: fix singularity tests · 70dc013f
  Laurent Modolo authored 6 years ago
  
  70dc013f
- kallisto: config for in2p3, add /usr/bin to path · e636850a
  Laurent Modolo authored 6 years ago
  
  e636850a
- kallisto: add verbose to indexing.nf · 5aaa2669
  Laurent Modolo authored 6 years ago
  
  5aaa2669
- kallisto: remove bash config · 5fca29e5
  Laurent Modolo authored 6 years ago
  
  5fca29e5
- kallisto: update in2p3 config · 2119e7bb
  Laurent Modolo authored 6 years ago
  
  2119e7bb
- kallisto: add info for in2p3 scratch · e943bb11
  Laurent Modolo authored 6 years ago
  
  e943bb11
- kallisto: test of in2p3 config file · 0304aca0
  Laurent Modolo authored 6 years ago
  
  0304aca0
Apr 09, 2019
- cutadapt: add v2.1 · d280e93a
  Laurent Modolo authored 6 years ago
  
  d280e93a
Mar 29, 2019
- hisat2: add v2.1.0 · b150232b
  Laurent Modolo authored 6 years ago
  
  b150232b
- update psmn module and hisat2 config · d51c969a
  Laurent Modolo authored 6 years ago
  
  d51c969a
- hisat2: merge samtools and hisat2 in the process · 59b0f72d
  Laurent Modolo authored 6 years ago
  
  59b0f72d
- hisat2: update process and config to match new format · 58d2e60a
  Laurent Modolo authored 6 years ago
  
  58d2e60a
Mar 28, 2019
- htseq: add v0.11.2 · ad48514d
  Laurent Modolo authored 6 years ago
  
  ad48514d
Mar 27, 2019
- src/nf_modules/Hisat2/ -> src/nf_modules/hisat2/ · 215c8f71
  nfontrod authored 6 years ago
  
  215c8f71