Commits · 2ac13df46d0618e6a799a7880f7cd2259b7434ef · LBMC / nextflow · GitLab

Snippets Groups Projects

Oct 26, 2021
- uscs: fix typo in input definition :19 · 2ac13df4
  Laurent Modolo authored 3 years ago
  
  2ac13df4
- danpos: fix typo :131 · 5acf2c2d
  Laurent Modolo authored 3 years ago
  
  5acf2c2d
Oct 25, 2021
- ucsc: fix typos in inputs channel · 4d0a4530
  Laurent Modolo authored 3 years ago
  
  4d0a4530
- uscs: rename bigwig_to_bedgraph to bigwig1_to_bedgraph1 · da83dcb8
  Laurent Modolo authored 3 years ago
  
  da83dcb8
- danspo: rename channel bedgraph -> bg · f24f02d7
  Laurent Modolo authored 3 years ago
  
  f24f02d7
- ucsc: fix typo :53 & :69 · 30d50acd
  Laurent Modolo authored 3 years ago
  
  30d50acd
- ucsc: fix typo :66 & :49 · 834e9f81
  Laurent Modolo authored 3 years ago
  
  834e9f81
- danpos: fix call to wig_to_bedgraph · d042ca7d
  Laurent Modolo authored 3 years ago
  
  d042ca7d
- uscs: modify wig_to_bedgraph · 66d36c04
  Laurent Modolo authored 3 years ago
  
  66d36c04
- danpos: fix fastq imput cardinality · a287ac99
  Laurent Modolo authored 3 years ago
  
  a287ac99
- danpos: change the way to compute fastq size · bc804b31
  Laurent Modolo authored 3 years ago
  
  bc804b31
- danpos: allow collect for fastq input to determine if data are paired-end · de76ce11
  Laurent Modolo authored 3 years ago
  
  de76ce11
Oct 21, 2021
- danpos: revert last commit · ada6bd95
  Laurent Modolo authored 3 years ago
  
  ada6bd95
- ucsc: add missing index input :158 · d058e0bb
  Laurent Modolo authored 3 years ago
  
  d058e0bb
- danpos: rm wce wig from output · 38c12624
  Laurent Modolo authored 3 years ago
  
  38c12624
Oct 20, 2021
- danpos: remove folder from the outputs · 6b84fab4
  Laurent Modolo authored 3 years ago
  
  6b84fab4
- danspo: add overwrite: true for publishDir · da7ef3e7
  Laurent Modolo authored 3 years ago
  
  da7ef3e7
- agat: add params to convertion processes · 5911d120
  Laurent Modolo authored 3 years ago
  
  5911d120
Oct 19, 2021
- src/example_chipseq.nf: work in progress of chip-seq example · 2d3c99c6
  Laurent Modolo authored 3 years ago
  
  2d3c99c6
- ucsc: add bedgraph_to_wig.pl to Docker · 7a350349
  Laurent Modolo authored 3 years ago
  
  7a350349
- ucsc: wig_to_bedgraph replace by an awk cmd · 463bb3b0
  Laurent Modolo authored 3 years ago
  
  463bb3b0
- ucsc: fix wig_to_bedgraph processes · 719ddc7d
  Laurent Modolo authored 3 years ago
  
  719ddc7d
- danspo: fix typo::72 · e2d1b99a
  Laurent Modolo authored 3 years ago
  
  e2d1b99a
- dpos: fix typo :67 · 2084bdac
  Laurent Modolo authored 3 years ago
  
  2084bdac
- danpos: re-add wce for dpos_bam · ac7209ac
  Laurent Modolo authored 3 years ago
  
  ac7209ac
- dpos: remove bgpos for dpos · c3010d1a
  Laurent Modolo authored 3 years ago
  
  c3010d1a
- danpos: replace peaks by positions for dpos outputs · 9021172a
  Laurent Modolo authored 3 years ago
  
  9021172a
- danpos: rm position.summit not present for dpos · a2c7c8e5
  Laurent Modolo authored 3 years ago
  
  a2c7c8e5
- danpos: rm "pooled" from output catch · 15de650f
  Laurent Modolo authored 3 years ago
  
  15de650f
- uscs: fix of wig_to_bedgraph · 610ef711
  Laurent Modolo authored 3 years ago
  
  610ef711
- danpos: remove wce for dpos to follow recommandations · 189e58db
  Laurent Modolo authored 3 years ago
  
  189e58db
- ucsc: fix output names :74 · 3f7b66ba
  Laurent Modolo authored 3 years ago
  
  3f7b66ba
- danpos: add include for wig2_to_bedgraph2 · d0529f42
  Laurent Modolo authored 3 years ago
  
  d0529f42
- danpos: add wig to bg convertion to each workflow · 83d5b95f
  Laurent Modolo authored 3 years ago
  
  83d5b95f
- ucsc: add wig2_to_bedgraph2 · 1aeb887a
  Laurent Modolo authored 3 years ago
  
  1aeb887a
- danpos: add xls to bed convertion in every process · 9db6166a
  Laurent Modolo authored 3 years ago
  
  9db6166a
Oct 18, 2021
- ucsc: rm wig2bedgraph process · 53ac9470
  Laurent Modolo authored 3 years ago
  
  53ac9470
- danspo: add wig to bedgraph convertion · e9946c0d
  Laurent Modolo authored 3 years ago
  
  e9946c0d
- ucsc: add wig2bedgraph process · 42e06407
  Laurent Modolo authored 3 years ago
  
  42e06407
Oct 15, 2021
- agat: add gff_to_gtf convertion · 4a29c9e0
  Laurent Modolo authored 3 years ago
  
  4a29c9e0