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LBMC
nextflow
Commits
da83dcb8
Verified
Commit
da83dcb8
authored
3 years ago
by
Laurent Modolo
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uscs: rename bigwig_to_bedgraph to bigwig1_to_bedgraph1
parent
f24f02d7
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src/nf_modules/ucsc/main.nf
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da83dcb8
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@@ -46,11 +46,11 @@ workflow wig_to_bedgraph {
fasta,
wig
)
bigwig_to_bedgraph(
bigwig
1
_to_bedgraph
1
(
wig_to_bigwig.out.bw
)
emit:
bg = bigwig_to_bedgraph.out.bg
bg = bigwig
1
_to_bedgraph
1
.out.bg
}
workflow wig2_to_bedgraph2 {
...
...
@@ -69,14 +69,14 @@ workflow wig2_to_bedgraph2 {
bg = bigwig2_to_bedgraph2.out.bg
}
params.bigwig_to_bedgraph = ""
params.bigwig_to_bedgraph_out = ""
process bigwig_to_bedgraph {
params.bigwig
1
_to_bedgraph
1
= ""
params.bigwig
1
_to_bedgraph
1
_out = ""
process bigwig
1
_to_bedgraph
1
{
container = "${container_url}"
label "big_mem_mono_cpus"
tag "${file_id}"
if (params.bigwig_to_bedgraph_out != "") {
publishDir "results/${params.bigwig_to_bedgraph_out}", mode: 'copy'
if (params.bigwig
1
_to_bedgraph
1
_out != "") {
publishDir "results/${params.bigwig
1
_to_bedgraph
1
_out}", mode: 'copy'
}
input:
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