diff --git a/src/nf_modules/ucsc/main.nf b/src/nf_modules/ucsc/main.nf index 8da10e1c0c1fcef416e21508622b13e4ddf9dc29..794002d073d52e9c9a42920e7b084d386d6d5341 100644 --- a/src/nf_modules/ucsc/main.nf +++ b/src/nf_modules/ucsc/main.nf @@ -46,11 +46,11 @@ workflow wig_to_bedgraph { fasta, wig ) - bigwig_to_bedgraph( + bigwig1_to_bedgraph1( wig_to_bigwig.out.bw ) emit: - bg = bigwig_to_bedgraph.out.bg + bg = bigwig1_to_bedgraph1.out.bg } workflow wig2_to_bedgraph2 { @@ -69,14 +69,14 @@ workflow wig2_to_bedgraph2 { bg = bigwig2_to_bedgraph2.out.bg } -params.bigwig_to_bedgraph = "" -params.bigwig_to_bedgraph_out = "" -process bigwig_to_bedgraph { +params.bigwig1_to_bedgraph1 = "" +params.bigwig1_to_bedgraph1_out = "" +process bigwig1_to_bedgraph1 { container = "${container_url}" label "big_mem_mono_cpus" tag "${file_id}" - if (params.bigwig_to_bedgraph_out != "") { - publishDir "results/${params.bigwig_to_bedgraph_out}", mode: 'copy' + if (params.bigwig1_to_bedgraph1_out != "") { + publishDir "results/${params.bigwig1_to_bedgraph1_out}", mode: 'copy' } input: