danspo: add overwrite: true for publishDir

src/nf_modules/danpos/main.nf

@@ -31,7 +31,7 @@ process dpos_bam {
   label "big_mem_mono_cpus"
   tag "$file_id"
   if (params.dpos_out != "") {
-    publishDir "results/${params.dpos_out}", mode: 'copy'
+    publishDir "results/${params.dpos_out}", mode: 'copy', overwrite: true
   }
 
   input:
@@ -93,7 +93,7 @@ process dpos_wig {
   label "big_mem_mono_cpus"
   tag "$file_id"
   if (params.dpos_out != "") {
-    publishDir "results/${params.dpos_out}", mode: 'copy'
+    publishDir "results/${params.dpos_out}", mode: 'copy', overwrite: true
   }
 
   input:
@@ -159,7 +159,7 @@ process dpos_wigvswig {
   label "big_mem_mono_cpus"
   tag "$file_id"
   if (params.dpos_out != "") {
-    publishDir "results/${params.dpos_out}", mode: 'copy'
+    publishDir "results/${params.dpos_out}", mode: 'copy', overwrite: true
   }
 
   input:
@@ -210,7 +210,7 @@ process dpeak_bam {
   label "big_mem_mono_cpus"
   tag "$file_id"
   if (params.dpeak_out != "") {
-    publishDir "results/${params.dpeak_out}", mode: 'copy'
+    publishDir "results/${params.dpeak_out}", mode: 'copy', overwrite: true
   }
 
   input:
@@ -275,7 +275,7 @@ process dpeak_wig {
   label "big_mem_mono_cpus"
   tag "$file_id"
   if (params.dpeak_out != "") {
-    publishDir "results/${params.dpeak_out}", mode: 'copy'
+    publishDir "results/${params.dpeak_out}", mode: 'copy', overwrite: true
   }
 
   input:
@@ -344,7 +344,7 @@ process dpeak_wigvswig {
   label "big_mem_mono_cpus"
   tag "$file_id"
   if (params.dpeak_out != "") {
-    publishDir "results/${params.dpeak_out}", mode: 'copy'
+    publishDir "results/${params.dpeak_out}", mode: 'copy', overwrite: true
   }
 
   input: