From da7ef3e769245186afbf1acc751f434b40a3deb6 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 20 Oct 2021 11:09:41 +0200
Subject: [PATCH] danspo: add overwrite: true for publishDir
---
src/nf_modules/danpos/main.nf | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/src/nf_modules/danpos/main.nf b/src/nf_modules/danpos/main.nf
index 981ac496..e5c72cd4 100644
--- a/src/nf_modules/danpos/main.nf
+++ b/src/nf_modules/danpos/main.nf
@@ -31,7 +31,7 @@ process dpos_bam {
label "big_mem_mono_cpus"
tag "$file_id"
if (params.dpos_out != "") {
- publishDir "results/${params.dpos_out}", mode: 'copy'
+ publishDir "results/${params.dpos_out}", mode: 'copy', overwrite: true
}
input:
@@ -93,7 +93,7 @@ process dpos_wig {
label "big_mem_mono_cpus"
tag "$file_id"
if (params.dpos_out != "") {
- publishDir "results/${params.dpos_out}", mode: 'copy'
+ publishDir "results/${params.dpos_out}", mode: 'copy', overwrite: true
}
input:
@@ -159,7 +159,7 @@ process dpos_wigvswig {
label "big_mem_mono_cpus"
tag "$file_id"
if (params.dpos_out != "") {
- publishDir "results/${params.dpos_out}", mode: 'copy'
+ publishDir "results/${params.dpos_out}", mode: 'copy', overwrite: true
}
input:
@@ -210,7 +210,7 @@ process dpeak_bam {
label "big_mem_mono_cpus"
tag "$file_id"
if (params.dpeak_out != "") {
- publishDir "results/${params.dpeak_out}", mode: 'copy'
+ publishDir "results/${params.dpeak_out}", mode: 'copy', overwrite: true
}
input:
@@ -275,7 +275,7 @@ process dpeak_wig {
label "big_mem_mono_cpus"
tag "$file_id"
if (params.dpeak_out != "") {
- publishDir "results/${params.dpeak_out}", mode: 'copy'
+ publishDir "results/${params.dpeak_out}", mode: 'copy', overwrite: true
}
input:
@@ -344,7 +344,7 @@ process dpeak_wigvswig {
label "big_mem_mono_cpus"
tag "$file_id"
if (params.dpeak_out != "") {
- publishDir "results/${params.dpeak_out}", mode: 'copy'
+ publishDir "results/${params.dpeak_out}", mode: 'copy', overwrite: true
}
input:
--
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