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Verified Commit bc804b31 authored by Laurent Modolo's avatar Laurent Modolo
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danpos: change the way to compute fastq size

parent de76ce11
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......@@ -34,7 +34,7 @@ process dpos_bam {
}
input:
tuple val(fastq_id), path(fastq)
tuple val(fastq)
tuple val(file_id), path(bam_ip), path(bam_wce)
output:
......@@ -56,10 +56,7 @@ process dpos_bam {
}
m = 0
if (fastq.size() == 2){
m = 1
}
if (fastq.size() > 2 & fastq[0].size() == 2){
if (fastq[1].size() == 2){
m = 1
}
"""
......@@ -97,7 +94,7 @@ process dpos_wig {
}
input:
tuple val(fastq_id), path(fastq)
tuple val(fastq)
tuple val(file_id), path(wig_ip)
output:
......@@ -119,10 +116,7 @@ process dpos_wig {
}
m = 0
if (fastq.size() == 2){
m = 1
}
if (fastq.size() > 2 & fastq[0].size() == 2){
if (fastq[1].size() == 2){
m = 1
}
"""
......@@ -164,7 +158,7 @@ process dpos_wigvswig {
}
input:
tuple val(fastq_id), path(fastq)
tuple val(fastq)
tuple val(file_id_a), path(wig_ip_a)
tuple val(file_id_b), path(wig_ip_b)
......@@ -187,10 +181,7 @@ process dpos_wigvswig {
}
m = 0
if (fastq.size() == 2){
m = 1
}
if (fastq.size() > 2 & fastq[0].size() == 2){
if (fastq[1].size() == 2){
m = 1
}
"""
......@@ -217,7 +208,7 @@ process dpeak_bam {
}
input:
tuple val(fastq_id), path(fastq)
tuple val(fastq)
tuple val(file_id), path(bam_ip), path(bam_wce)
output:
......@@ -240,10 +231,7 @@ process dpeak_bam {
}
m = 0
if (fastq.size() == 2){
m = 1
}
if (fastq.size() > 2 & fastq[0].size() == 2){
if (fastq[1].size() == 2){
m = 1
}
"""
......@@ -283,7 +271,7 @@ process dpeak_wig {
}
input:
tuple val(fastq_id), path(fastq)
tuple val(fastq)
tuple val(file_id), path(wig_ip), path(wig_wce)
output:
......@@ -305,10 +293,7 @@ process dpeak_wig {
}
m = 0
if (fastq.size() == 2){
m = 1
}
if (fastq.size() > 2 & fastq[0].size() == 2){
if (fastq[1].size() == 2){
m = 1
}
"""
......@@ -353,7 +338,7 @@ process dpeak_wigvswig {
}
input:
tuple val(fastq_id), path(fastq)
tuple val(fastq)
tuple val(file_id_a), path(wig_ip_a), path(wig_wce_a)
tuple val(file_id_b), path(wig_ip_b), path(wig_wce_b)
......@@ -376,10 +361,7 @@ process dpeak_wigvswig {
}
m = 0
if (fastq.size() == 2){
m = 1
}
if (fastq.size() > 2 & fastq[0].size() == 2){
if (fastq[1].size() == 2){
m = 1
}
"""
......
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