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Verified Commit e9946c0d authored by Laurent Modolo's avatar Laurent Modolo
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danspo: add wig to bedgraph convertion

parent 42e06407
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......@@ -2,12 +2,28 @@ version = "v2.2.2_cv3"
container_url = "biocontainers/danpos:${version}"
include {
bigwig2_to_wig2
bigwig2_to_wig2;
wig_to_bedgraph
} from "./../ucsc/main.nf"
params.dpos = "--smooth_width 0 -n N "
params.dpos_out = ""
workflow dpos_bam_bg {
take:
fastq
bam
main:
dpos_bam(fastq, bam)
wig_to_bedgraph(dpos_bam.out.wig)
emit:
bedgraph = wig_to_bedgraph.out.bedgraph
wig = dpos_bam.out.wig
folder = dpos_bam.out.folder
}
process dpos_bam {
container = "${container_url}"
label "big_mem_mono_cpus"
......
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