diff --git a/src/nf_modules/danpos/main.nf b/src/nf_modules/danpos/main.nf index 8998f4c8ad93cd56802f4054f7a6dc43e0324cb4..3bcd4e6b14b35da03debc3389a0fe4db269f4ec9 100644 --- a/src/nf_modules/danpos/main.nf +++ b/src/nf_modules/danpos/main.nf @@ -2,12 +2,28 @@ version = "v2.2.2_cv3" container_url = "biocontainers/danpos:${version}" include { - bigwig2_to_wig2 + bigwig2_to_wig2; + wig_to_bedgraph } from "./../ucsc/main.nf" params.dpos = "--smooth_width 0 -n N " params.dpos_out = "" +workflow dpos_bam_bg { + take: + fastq + bam + + main: + dpos_bam(fastq, bam) + wig_to_bedgraph(dpos_bam.out.wig) + + emit: + bedgraph = wig_to_bedgraph.out.bedgraph + wig = dpos_bam.out.wig + folder = dpos_bam.out.folder +} + process dpos_bam { container = "${container_url}" label "big_mem_mono_cpus"