Commits · 1011a2a3f1c8bd8c2634e4c4b41413d3b22fd643 · LBMC / nextflow · GitLab

Snippets Groups Projects

Jan 06, 2022
- Docker: add histat2 2.2.1 · 1011a2a3
  Laurent Modolo authored 3 years ago
  
  Verified
  
  1011a2a3
- Docker: add samtools 1.14 · 5090e8a5
  Laurent Modolo authored 3 years ago
  
  Verified
  
  5090e8a5
Nov 30, 2021
- Close merge request if [[ -z ]]; then ; echo test; fi · 7daa2241
  Laurent Modolo authored 3 years ago
  
  Verified
  
  7daa2241
Nov 02, 2021
- multiqc: remove view · 49eb0ea8
  Laurent Modolo authored 3 years ago
  
  Verified
  
  49eb0ea8
- multiqc: better handling of List as input · aaec95a6
  Laurent Modolo authored 3 years ago
  
  Verified
  
  aaec95a6
- samtools: add compatbility with mutlqc · b87a994a
  Laurent Modolo authored 3 years ago
  
  Verified
  
  b87a994a
- samtools and picardtools: add compatibility with mutliqc · e9175cbd
  Laurent Modolo authored 3 years ago
  
  Verified
  
  e9175cbd
- samtools: rename flagstat log for multiqc · a7358e47
  Laurent Modolo authored 3 years ago
  
  Verified
  
  a7358e47
- mutliqc: Dockerfile switch from debian to python img · 6a448ad6
  Laurent Modolo authored 3 years ago
  
  Verified
  
  6a448ad6
- multiqc: update 1.9 -> 1.11 · bc023a73
  Laurent Modolo authored 3 years ago
  
  Verified
  
  bc023a73
- multiqc: remove view · fd6c4ae7
  Laurent Modolo authored 3 years ago
  
  Verified
  
  fd6c4ae7
- mutliqc.nf: fix flatten procedure · a92d2e02
  Laurent Modolo authored 3 years ago
  
  Verified
  
  a92d2e02
Oct 26, 2021
- danpos: fix typo :164 · f8dba601
  Laurent Modolo authored 3 years ago
  
  Verified
  
  f8dba601
- danpos: fix typo :153 · ffc99bdc
  Laurent Modolo authored 3 years ago
  
  Verified
  
  ffc99bdc
- danpos: include bigwig_to_wig :6 · 0acd330e
  Laurent Modolo authored 3 years ago
  
  Verified
  
  0acd330e
- danpos: rename dpos_bw_no_b :153 · 0021af6c
  Laurent Modolo authored 3 years ago
  
  Verified
  
  0021af6c
- danpos: add dpos_bw_no_b process · f1a4012f
  Laurent Modolo authored 3 years ago
  
  Verified
  
  f1a4012f
- danpos: add -b to dpos_wig · f8760e45
  Laurent Modolo authored 3 years ago
  
  Verified
  
  f8760e45
- danspo: fix dpos_bw wig output · c87853f5
  Laurent Modolo authored 3 years ago
  
  Verified
  
  c87853f5
- danspo: fix dpos_wig output · 9351da4f
  Laurent Modolo authored 3 years ago
  
  Verified
  
  9351da4f
- uscs: fix typo in input definition :19 · 2ac13df4
  Laurent Modolo authored 3 years ago
  
  Verified
  
  2ac13df4
- danpos: fix typo :131 · 5acf2c2d
  Laurent Modolo authored 3 years ago
  
  Verified
  
  5acf2c2d
Oct 25, 2021
- ucsc: fix typos in inputs channel · 4d0a4530
  Laurent Modolo authored 3 years ago
  
  Verified
  
  4d0a4530
- uscs: rename bigwig_to_bedgraph to bigwig1_to_bedgraph1 · da83dcb8
  Laurent Modolo authored 3 years ago
  
  Verified
  
  da83dcb8
- danspo: rename channel bedgraph -> bg · f24f02d7
  Laurent Modolo authored 3 years ago
  
  Verified
  
  f24f02d7
- ucsc: fix typo :53 & :69 · 30d50acd
  Laurent Modolo authored 3 years ago
  
  Verified
  
  30d50acd
- ucsc: fix typo :66 & :49 · 834e9f81
  Laurent Modolo authored 3 years ago
  
  Verified
  
  834e9f81
- danpos: fix call to wig_to_bedgraph · d042ca7d
  Laurent Modolo authored 3 years ago
  
  Verified
  
  d042ca7d
- uscs: modify wig_to_bedgraph · 66d36c04
  Laurent Modolo authored 3 years ago
  
  Verified
  
  66d36c04
- danpos: fix fastq imput cardinality · a287ac99
  Laurent Modolo authored 3 years ago
  
  Verified
  
  a287ac99
- danpos: change the way to compute fastq size · bc804b31
  Laurent Modolo authored 3 years ago
  
  Verified
  
  bc804b31
- danpos: allow collect for fastq input to determine if data are paired-end · de76ce11
  Laurent Modolo authored 3 years ago
  
  Verified
  
  de76ce11
Oct 21, 2021
- danpos: revert last commit · ada6bd95
  Laurent Modolo authored 3 years ago
  
  Verified
  
  ada6bd95
- ucsc: add missing index input :158 · d058e0bb
  Laurent Modolo authored 3 years ago
  
  Verified
  
  d058e0bb
- danpos: rm wce wig from output · 38c12624
  Laurent Modolo authored 3 years ago
  
  Verified
  
  38c12624
Oct 20, 2021
- danpos: remove folder from the outputs · 6b84fab4
  Laurent Modolo authored 3 years ago
  
  Verified
  
  6b84fab4
- danspo: add overwrite: true for publishDir · da7ef3e7
  Laurent Modolo authored 3 years ago
  
  Verified
  
  da7ef3e7
- agat: add params to convertion processes · 5911d120
  Laurent Modolo authored 3 years ago
  
  Verified
  
  5911d120
Oct 19, 2021
- src/example_chipseq.nf: work in progress of chip-seq example · 2d3c99c6
  Laurent Modolo authored 3 years ago
  
  Verified
  
  2d3c99c6
- ucsc: add bedgraph_to_wig.pl to Docker · 7a350349
  Laurent Modolo authored 3 years ago
  
  Verified
  
  7a350349