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Verified Commit 1011a2a3 authored by Laurent Modolo's avatar Laurent Modolo
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Docker: add histat2 2.2.1

parent 5090e8a5
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FROM lbmc/samtools:1.14 as build
ENV HISAT2_VERSION=2.2.1
FROM quay.io/biocontainers/hisat2:2.2.1--h1b792b2_3
COPY --from=build \
/usr/local/bin/samtools /usr/local/bin/
COPY --from=build \
/usr/local/bin/../lib/libhts.so.3 \
/usr/local/lib/libtinfow.so.6 \
/usr/local/lib/libncursesw.so.6 \
/usr/local/lib/libz.so.1 \
/usr/local/lib/libdeflate.so.0 \
/usr/local/lib/liblzma.so.5 \
/usr/local/lib/libbz2.so.1.0 /usr/local/lib/
COPY --from=build \
/lib/x86_64-linux-gnu/libm.so.6 \
/lib/x86_64-linux-gnu/libpthread.so.0 \
/lib/x86_64-linux-gnu/libc.so.6 \
/lib/x86_64-linux-gnu/libdl.so.2 \
/lib/x86_64-linux-gnu/librt.so.1 /lib/x86_64-linux-gnu/
COPY --from=build \
/lib64/ld-linux-x86-64.so.2 /lib64/
\ No newline at end of file
#!/bin/sh
docker pull lbmc/hisat2:2.2.1
# docker build src/.docker_modules/hisat2/2.1.1 -t 'lbmc/hisat2:2.2.1'
# docker push lbmc/hisat2:2.2.1
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/hisat2:2.2.1" --push src/.docker_modules/hisat2/2.2.1
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