Commits · fba1fce0de316eefa5c127792f3fc50b1f78c54b · LBMC / Delattre / kmer diff

Jun 07, 2023
- add cpu args to kmerclust · fba1fce0
  Laurent Modolo authored 1 year ago
  
  fba1fce0
- kmerclust: fix process name · 1a3ed11b
  Laurent Modolo authored 1 year ago
  
  1a3ed11b
- add kmerclust module to main.nf · ed018a7e
  Laurent Modolo authored 1 year ago
  
  ed018a7e
- add kmerclust module · 1efc9788
  Laurent Modolo authored 1 year ago
  
  1efc9788
- create new repository for clustering · 13c5b824
  Laurent Modolo authored 1 year ago
  
  13c5b824
Jun 06, 2023
- clustering: add roxygen · c6daedd9
  Laurent Modolo authored 1 year ago
  
  c6daedd9
Jun 05, 2023
- clustering: add boostrap for BIC · 1f87de79
  Laurent Modolo authored 1 year ago
  
  1f87de79
- clustering: add LRT · f9cc4071
  Laurent Modolo authored 1 year ago
  
  f9cc4071
May 31, 2023
- add LTR and BIC · 13335ade
  Laurent Modolo authored 1 year ago
  
  13335ade
- add clustering XY and XO · d5e24c1b
  Laurent Modolo authored 1 year ago
  
  d5e24c1b
May 26, 2023
- Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/Delattre/kmer-diff · a7d32fba
  Laurent Modolo authored 1 year ago
  
  a7d32fba
- clustering.Rmd: working XY clustering · e0a32115
  Laurent Modolo authored 1 year ago
  
  e0a32115
- Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/Delattre/kmer-diff · d09e365a
  Laurent Modolo authored 1 year ago
  
  d09e365a
- clustering.Rmd: code to parse csv file · 1f79a60f
  Laurent Modolo authored 1 year ago
  
  1f79a60f
May 23, 2023
- mergekmer.nf: add kmersize in the results path · 7bd66572
  Laurent Modolo authored 1 year ago
  
  7bd66572
- change collate step to collate by species · b67793d5
  Laurent Modolo authored 1 year ago
  
  b67793d5
May 22, 2023
- add clustering.Rmd · 43dd449d
  Laurent Modolo authored 1 year ago
  
  43dd449d
May 16, 2023
- update mergekmer to v0.1.2 · e2be1c8b
  Laurent Modolo authored 1 year ago
  
  e2be1c8b
- change output name for mergekmer collate · 8b57acd8
  Laurent Modolo authored 1 year ago
  
  8b57acd8
May 12, 2023
- fix sample names in sample.csv · 33272ce7
  Laurent Modolo authored 1 year ago
  
  33272ce7
- remove COLLATEKMER2 · 239ed786
  Laurent Modolo authored 1 year ago
  
  239ed786
- update .gitignore · 06f73a5b
  Laurent Modolo authored 1 year ago
  
  06f73a5b
- add renv.lock · 941a8c43
  Laurent Modolo authored 1 year ago
  
  941a8c43
- add renv · 41ae5bf9
  Laurent Modolo authored 1 year ago
  
  41ae5bf9
- update .gitignore · bfb4d4f4
  Laurent Modolo authored 1 year ago
  
  bfb4d4f4
- update .gitignore · d0c13cfb
  Laurent Modolo authored 1 year ago
  
  d0c13cfb
- clustering.Rmd: working clustering without constraints · 2e90d56b
  Laurent Modolo authored 1 year ago
  
  2e90d56b
May 10, 2023
- nextflow.config: fix name for mono_cpus · c8c5ecbe
  Laurent Modolo authored 1 year ago
  
  c8c5ecbe
- mergekmer.nf: fix id · 13429532
  Laurent Modolo authored 1 year ago
  
  13429532
- fix typo · 9a17ca7e
  Laurent Modolo authored 1 year ago
  
  9a17ca7e
- rename output for collatekmer · 9ed79433
  Laurent Modolo authored 1 year ago
  
  9ed79433
- split COLLATEKMER in 2 steps · 0a3203a1
  Laurent Modolo authored 1 year ago
  
  0a3203a1
May 09, 2023
- main.nf: keep r2 id information · 5554388f
  Laurent Modolo authored 1 year ago
  
  5554388f
May 02, 2023
- remove mergekmer2 from main.nf · 7d211e60
  Laurent Modolo authored 1 year ago
  
  7d211e60
Apr 28, 2023
- fix collatekmer · a7d66307
  Laurent Modolo authored 1 year ago
  
  a7d66307
- add kmersize parameter · f9892e16
  Laurent Modolo authored 1 year ago
  
  f9892e16
- fix MERGEKMER inclusion · 796d4099
  Laurent Modolo authored 1 year ago
  
  796d4099
- main.nf: add 2 phases of merge · b35acdb3
  Laurent Modolo authored 1 year ago
  
  b35acdb3
Apr 27, 2023
- add collatekmer step · 2c070852
  Laurent Modolo authored 1 year ago
  
  2c070852
- main.nf: remove view() · a68dbc6d
  Laurent Modolo authored 1 year ago
  
  a68dbc6d