Commits · b67793d5b182445c3c2311f31be108621a8df52e · LBMC / Delattre / kmer diff

May 23, 2023
- change collate step to collate by species · b67793d5
  Laurent Modolo authored 2 years ago
  
  b67793d5
May 12, 2023
- remove COLLATEKMER2 · 239ed786
  Laurent Modolo authored 2 years ago
  
  239ed786
May 10, 2023
- fix typo · 9a17ca7e
  Laurent Modolo authored 2 years ago
  
  9a17ca7e
- split COLLATEKMER in 2 steps · 0a3203a1
  Laurent Modolo authored 2 years ago
  
  0a3203a1
May 09, 2023
- main.nf: keep r2 id information · 5554388f
  Laurent Modolo authored 2 years ago
  
  5554388f
May 02, 2023
- remove mergekmer2 from main.nf · 7d211e60
  Laurent Modolo authored 2 years ago
  
  7d211e60
Apr 28, 2023
- fix collatekmer · a7d66307
  Laurent Modolo authored 2 years ago
  
  a7d66307
- add kmersize parameter · f9892e16
  Laurent Modolo authored 2 years ago
  
  f9892e16
- fix MERGEKMER inclusion · 796d4099
  Laurent Modolo authored 2 years ago
  
  796d4099
- main.nf: add 2 phases of merge · b35acdb3
  Laurent Modolo authored 2 years ago
  
  b35acdb3
Apr 27, 2023
- add collatekmer step · 2c070852
  Laurent Modolo authored 2 years ago
  
  2c070852
- main.nf: remove view() · a68dbc6d
  Laurent Modolo authored 2 years ago
  
  a68dbc6d
Apr 26, 2023
- main.nf: add grouping before merge · 7b01e646
  Laurent Modolo authored 2 years ago
  
  7b01e646
- add mergekmer module · 11ae71a4
  Laurent Modolo authored 2 years ago
  
  11ae71a4
Apr 20, 2023
- add split process · 93338e8d
  Laurent Modolo authored 2 years ago
  
  93338e8d
- switch back to fastkmers · d51d04c3
  Laurent Modolo authored 2 years ago
  
  d51d04c3
Apr 18, 2023
- main.nf: add kmc · 4dd52f26
  Laurent Modolo authored 2 years ago
  
  4dd52f26
Mar 29, 2023
- split r1 and r2 · cbe4c374
  Laurent Modolo authored 2 years ago
  
  cbe4c374
- fix csv parsing · 7a6edf42
  Laurent Modolo authored 2 years ago
  
  7a6edf42
- add nextflow pipeline for fastkmers · 5f215dd4
  Laurent Modolo authored 2 years ago
  
  5f215dd4