Commits · e13bd1eb6547dae645f5ad818beb704b3cf9dff4 · Xavier Grand / ChIPster · GitLab

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Apr 15, 2021
- bwa: fix library variable definition · e13bd1eb
  Laurent Modolo authored 4 years ago
  
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  e13bd1eb
- bwa: fix typo in index_fasta · edd36c5b
  Laurent Modolo authored 4 years ago
  
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  edd36c5b
- samtools: update publishDir directives · c6944a8e
  Laurent Modolo authored 4 years ago
  
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  c6944a8e
- nf_modules: fix bug in variable names for samtools and bwa · c75f1dda
  Laurent Modolo authored 4 years ago
  
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  c75f1dda
- nf_modules: update last main.nf to change in CONTRIBUTING.md · fdb5acb8
  Laurent Modolo authored 4 years ago
  
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  fdb5acb8
Apr 14, 2021
- CONTRIBUTING.md: add info on channel creation · dbbbac30
  Laurent Modolo authored 4 years ago
  
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  dbbbac30
- bwa: update to match CONTRIBUTING.md · c6dce992
  Laurent Modolo authored 4 years ago
  
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  c6dce992
- bowtie: update to match CONTRIBUTING.md · b867bf9a
  Laurent Modolo authored 4 years ago
  
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- fastp: update accel_s1plus protocol · 1f72b2c4
  Laurent Modolo authored 4 years ago
  
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  1f72b2c4
- samtools: update to follow CONTRIBUTING.md · 84daa858
  Laurent Modolo authored 4 years ago
  
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  84daa858
- bowtie2: replace pair_id by file_id · 7c1e0c6c
  Laurent Modolo authored 4 years ago
  
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- bowtie2: fix input tuple :45 · 5de7aac6
  Laurent Modolo authored 4 years ago
  
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- bowtie2: update to match contributing.md · fd494cd5
  Laurent Modolo authored 4 years ago
  
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- nf_modules: update module from g2gtools to multiqc to match the CONTRIBUTING.md · 8afe54bb
  Laurent Modolo authored 4 years ago
  
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  8afe54bb
- fastp: fix variable name in fastp_accel_1splus · 9c9cf82d
  Laurent Modolo authored 4 years ago
  
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  9c9cf82d
- mv PSMN singularity img to /Xnfs/abc/singularity/ · 9365b6e3
  Laurent Modolo authored 4 years ago
  
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- fastp: update fastp to match CONTRIBUTING.md · 2924d6ef
  Laurent Modolo authored 4 years ago
  
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  2924d6ef
- kallisto: update script to match CONTRIBUTING.md · be4657c7
  Laurent Modolo authored 4 years ago
  
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- kallisto: fix warning in mapping_fastq about single-end parameters · 6f027a2e
  Laurent Modolo authored 4 years ago
  
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  6f027a2e
Apr 13, 2021
- update solution_RNASeq.nf to match CONTRIBUTING.md · 8b70de28
  Laurent Modolo authored 4 years ago
  
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  8b70de28
- bedtools: fix typo :19 · bc81c837
  Laurent Modolo authored 4 years ago
  
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- kallisto: fix typo :15 · b2f88ee7
  Laurent Modolo authored 4 years ago
  
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- bedtools: update to match CONTRIBUTING.md · 699cd563
  Laurent Modolo authored 4 years ago
  
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  699cd563
- kallisto: update file to match CONTRIBUTING.md · 9a588dd5
  Laurent Modolo authored 4 years ago
  
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  9a588dd5
- solution_RNASeq.nf: use generic process instead of _pairedend ones · 0245b04c
  Laurent Modolo authored 4 years ago
  
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  0245b04c
- kallisto: fix typo :47 · 8ddc3ee6
  Laurent Modolo authored 4 years ago
  
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  8ddc3ee6
- cutadapt: fix typo :34 · d69ff6ea
  Laurent Modolo authored 4 years ago
  
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  d69ff6ea
- cutadapt: fix bug :28 · 18e214ae
  Laurent Modolo authored 4 years ago
  
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  18e214ae
- nextflow.config: add small_mem label · 47556f87
  Laurent Modolo authored 4 years ago
  
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- rm old script from src/ · 3e09b513
  Laurent Modolo authored 4 years ago
  
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  3e09b513
- change path for the shared singularity img at the ccin2p3 · 39464370
  Laurent Modolo authored 4 years ago
  
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- fastp: add --interleaved_in for 2nd fastp for accel_s1plus · 8ef138b4
  Laurent Modolo authored 4 years ago
  
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  8ef138b4
- fastp: update accel_1splus protocol · d2e7b69c
  Laurent Modolo authored 4 years ago
  
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  d2e7b69c
- fastp: add accel_1splus protocol trimming with a switch · c98150b9
  Laurent Modolo authored 4 years ago
  
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  c98150b9
Apr 08, 2021
- nf_modules: add params.<process_names> for each process · 4a7355a2
  Laurent Modolo authored 4 years ago
  
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  4a7355a2
- bwa: add params.bwa · ece57ce1
  Laurent Modolo authored 4 years ago
  
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  ece57ce1
- fastp: add params.fastp · e8c33f90
  Laurent Modolo authored 4 years ago
  
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Mar 25, 2021
- Docker: add alntools:dd96682 · a83195d8
  Laurent Modolo authored 4 years ago
  
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  a83195d8
- Docker: add emase-zero:0.3.1 · 3888c6a4
  Laurent Modolo authored 4 years ago
  
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  3888c6a4
Mar 22, 2021
- Docker: add pandoc 2.11 · 5f4f434b
  Laurent Modolo authored 4 years ago
  
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  5f4f434b