Commits · d2e7b69c488a99c723a8231209ec096dd9bafccf · Xavier Grand / ChIPster · GitLab

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Apr 13, 2021
- fastp: update accel_1splus protocol · d2e7b69c
  Laurent Modolo authored 3 years ago
  
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- fastp: add accel_1splus protocol trimming with a switch · c98150b9
  Laurent Modolo authored 3 years ago
  
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Apr 08, 2021
- nf_modules: add params.<process_names> for each process · 4a7355a2
  Laurent Modolo authored 3 years ago
  
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- bwa: add params.bwa · ece57ce1
  Laurent Modolo authored 3 years ago
  
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- fastp: add params.fastp · e8c33f90
  Laurent Modolo authored 3 years ago
  
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Apr 02, 2021
- Merge branch 'master' into 'master' · 52112e7d
  Laurent Modolo authored 3 years ago
  
  tophat dockerfile : fix beug and add bowtie1 installation See merge request LBMC/nextflow!21
  52112e7d
- Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/nextflow · b044a62e
  adminmanu authored 3 years ago
  
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Mar 25, 2021
- Docker: add alntools:dd96682 · a83195d8
  Laurent Modolo authored 3 years ago
  
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- Docker: add emase-zero:0.3.1 · 3888c6a4
  Laurent Modolo authored 3 years ago
  
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Mar 22, 2021
- Docker: add pandoc 2.11 · 5f4f434b
  Laurent Modolo authored 4 years ago
  
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Mar 17, 2021
- g2gtools: fix typo :13 · 3c856968
  Laurent Modolo authored 4 years ago
  
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- g2gtools: fix typo : 13 · 4c9ca119
  Laurent Modolo authored 4 years ago
  
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- g2gtools: remove .gz from fa.gz · db1f8f5e
  Laurent Modolo authored 4 years ago
  
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- g2gtools: fix typo :47 · b3e138c7
  Laurent Modolo authored 4 years ago
  
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- g2gtools: rename fasta output to fa.gz · 2a74ce1f
  Laurent Modolo authored 4 years ago
  
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- g2gtools: pass along tbi file · 873b31fd
  Laurent Modolo authored 4 years ago
  
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- g2gtools: change output name of vcf2vci · b4761bcd
  Laurent Modolo authored 4 years ago
  
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- g2gtools: fix vci_build command · f167d159
  Laurent Modolo authored 4 years ago
  
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Mar 16, 2021
- samtools: fix input for multiqc process · 15bb2a0a
  Laurent Modolo authored 4 years ago
  
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- samtools: fix output for multiqc process · ce6cb60b
  Laurent Modolo authored 4 years ago
  
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- samtools: add process to rename files for multiqc · 309f80d7
  Laurent Modolo authored 4 years ago
  
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- nexflow.config: rm sratch config for psmn · 22495331
  Laurent Modolo authored 4 years ago
  
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- g2gtools: simpler file_id structure · 17d3a31f
  Laurent Modolo authored 4 years ago
  
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- g2gtools: caputre stdout sent to stderr... · d80598c8
  Laurent Modolo authored 4 years ago
  
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- g2gtools: capture stdout sent to stderr · 216457b0
  Laurent Modolo authored 4 years ago
  
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- g2gtools: change file_id format · 8b41995c
  Laurent Modolo authored 4 years ago
  
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- gatk4: fix gvcf_genotyping variable :199 · 106ff35f
  Laurent Modolo authored 4 years ago
  
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- gatk4: change output to avoid using file_id var as it can be a dict · e0b5c50b
  Laurent Modolo authored 4 years ago
  
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Mar 15, 2021
- minimap2: add main.nf · 324f5505
  Laurent Modolo authored 4 years ago
  
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- Docker: add minimap2:2.17 · 364632ef
  Laurent Modolo authored 4 years ago
  
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Mar 12, 2021
- g2gtools: add convert process · 9c64bd7b
  Laurent Modolo authored 4 years ago
  
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- bwa: add single_end mapping · d0b4f082
  Laurent Modolo authored 4 years ago
  
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- add missing pairend_end & single_end switch · c64d2dd0
  Laurent Modolo authored 4 years ago
  
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- add paired_end and single_end switch version to all implementations · e4d5b19b
  Laurent Modolo authored 4 years ago
  
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- fastp: test paired_end & single_end process · 720b1977
  Laurent Modolo authored 4 years ago
  
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- bwa: fix file_id definition · 71eb3162
  Laurent Modolo authored 4 years ago
  
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  71eb3162
- bwa: fix bug :46 · 801d4f6a
  Laurent Modolo authored 4 years ago
  
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- bwa: fix previous commit · e801efee
  Laurent Modolo authored 4 years ago
  
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- bwa: conditional definition of the library tag · 70a181f4
  Laurent Modolo authored 4 years ago
  
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- bwa: fix bam tag format · 0db3382c
  Laurent Modolo authored 4 years ago
  
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  0db3382c