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Verified Commit 0db3382c authored by Laurent Modolo's avatar Laurent Modolo
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bwa: fix bam tag format

parent e66e20ab
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......@@ -21,7 +21,6 @@ bwa index -p ${fasta.simpleName} ${fasta} \
}
params.bwa_mem_R = '@RG\\tID:${library}\\tSM:${library}\\tLB:lib_${library}\\tPL:illumina'
process mapping_fastq {
container = "${container_url}"
label "big_mem_multi_cpus"
......@@ -36,6 +35,7 @@ process mapping_fastq {
tuple val(file_id), path("${file_id}_bwa_report.txt"), emit: report
script:
bwa_mem_R = "@RG\\tID:${library}\\tSM:${library}\\tLB:lib_${library}\\tPL:illumina"
"""
bwa mem -t ${task.cpus} \
-R '${params.bwa_mem_R}' \
......
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