Commits · be4657c776da9c7c6ca6198a6a96f585cb7bab6f · Xavier Grand / ChIPster · GitLab

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Apr 14, 2021
- kallisto: update script to match CONTRIBUTING.md · be4657c7
  Laurent Modolo authored 3 years ago
  
  be4657c7
- kallisto: fix warning in mapping_fastq about single-end parameters · 6f027a2e
  Laurent Modolo authored 3 years ago
  
  6f027a2e
Apr 13, 2021
- update solution_RNASeq.nf to match CONTRIBUTING.md · 8b70de28
  Laurent Modolo authored 3 years ago
  
  8b70de28
- bedtools: fix typo :19 · bc81c837
  Laurent Modolo authored 3 years ago
  
  bc81c837
- kallisto: fix typo :15 · b2f88ee7
  Laurent Modolo authored 3 years ago
  
  b2f88ee7
- bedtools: update to match CONTRIBUTING.md · 699cd563
  Laurent Modolo authored 3 years ago
  
  699cd563
- kallisto: update file to match CONTRIBUTING.md · 9a588dd5
  Laurent Modolo authored 3 years ago
  
  9a588dd5
- solution_RNASeq.nf: use generic process instead of _pairedend ones · 0245b04c
  Laurent Modolo authored 3 years ago
  
  0245b04c
- kallisto: fix typo :47 · 8ddc3ee6
  Laurent Modolo authored 3 years ago
  
  8ddc3ee6
- cutadapt: fix typo :34 · d69ff6ea
  Laurent Modolo authored 3 years ago
  
  d69ff6ea
- cutadapt: fix bug :28 · 18e214ae
  Laurent Modolo authored 3 years ago
  
  18e214ae
- nextflow.config: add small_mem label · 47556f87
  Laurent Modolo authored 3 years ago
  
  47556f87
- rm old script from src/ · 3e09b513
  Laurent Modolo authored 3 years ago
  
  3e09b513
- change path for the shared singularity img at the ccin2p3 · 39464370
  Laurent Modolo authored 3 years ago
  
  39464370
- fastp: add --interleaved_in for 2nd fastp for accel_s1plus · 8ef138b4
  Laurent Modolo authored 3 years ago
  
  8ef138b4
- fastp: update accel_1splus protocol · d2e7b69c
  Laurent Modolo authored 3 years ago
  
  d2e7b69c
- fastp: add accel_1splus protocol trimming with a switch · c98150b9
  Laurent Modolo authored 3 years ago
  
  c98150b9
Apr 08, 2021
- nf_modules: add params.<process_names> for each process · 4a7355a2
  Laurent Modolo authored 3 years ago
  
  4a7355a2
- bwa: add params.bwa · ece57ce1
  Laurent Modolo authored 3 years ago
  
  ece57ce1
- fastp: add params.fastp · e8c33f90
  Laurent Modolo authored 3 years ago
  
  e8c33f90
Mar 25, 2021
- Docker: add alntools:dd96682 · a83195d8
  Laurent Modolo authored 4 years ago
  
  a83195d8
- Docker: add emase-zero:0.3.1 · 3888c6a4
  Laurent Modolo authored 4 years ago
  
  3888c6a4
Mar 22, 2021
- Docker: add pandoc 2.11 · 5f4f434b
  Laurent Modolo authored 4 years ago
  
  5f4f434b
Mar 17, 2021
- g2gtools: fix typo :13 · 3c856968
  Laurent Modolo authored 4 years ago
  
  3c856968
- g2gtools: fix typo : 13 · 4c9ca119
  Laurent Modolo authored 4 years ago
  
  4c9ca119
- g2gtools: remove .gz from fa.gz · db1f8f5e
  Laurent Modolo authored 4 years ago
  
  db1f8f5e
- g2gtools: fix typo :47 · b3e138c7
  Laurent Modolo authored 4 years ago
  
  b3e138c7
- g2gtools: rename fasta output to fa.gz · 2a74ce1f
  Laurent Modolo authored 4 years ago
  
  2a74ce1f
- g2gtools: pass along tbi file · 873b31fd
  Laurent Modolo authored 4 years ago
  
  873b31fd
- g2gtools: change output name of vcf2vci · b4761bcd
  Laurent Modolo authored 4 years ago
  
  b4761bcd
- g2gtools: fix vci_build command · f167d159
  Laurent Modolo authored 4 years ago
  
  f167d159
Mar 16, 2021
- samtools: fix input for multiqc process · 15bb2a0a
  Laurent Modolo authored 4 years ago
  
  15bb2a0a
- samtools: fix output for multiqc process · ce6cb60b
  Laurent Modolo authored 4 years ago
  
  ce6cb60b
- samtools: add process to rename files for multiqc · 309f80d7
  Laurent Modolo authored 4 years ago
  
  309f80d7
- nexflow.config: rm sratch config for psmn · 22495331
  Laurent Modolo authored 4 years ago
  
  22495331
- g2gtools: simpler file_id structure · 17d3a31f
  Laurent Modolo authored 4 years ago
  
  17d3a31f
- g2gtools: caputre stdout sent to stderr... · d80598c8
  Laurent Modolo authored 4 years ago
  
  d80598c8
- g2gtools: capture stdout sent to stderr · 216457b0
  Laurent Modolo authored 4 years ago
  
  216457b0
- g2gtools: change file_id format · 8b41995c
  Laurent Modolo authored 4 years ago
  
  8b41995c
- gatk4: fix gvcf_genotyping variable :199 · 106ff35f
  Laurent Modolo authored 4 years ago
  
  106ff35f