Commits · fe446d3888539428fd69b7cffbeeb45a608cd50c · mherbett / nextflow · GitLab

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Jun 06, 2018
- rnaseq.nf change fasta_extracted o fsta_files_extracted · fe446d38
  mherbett authored 6 years ago
  
  fe446d38
- RNAseq.n : remove channels and params, fasta_extacted from bedtools, fastq om UrQt fastq_files_trim · 28be5988
  mherbett authored 6 years ago
  
  28be5988
- RNAseq.config : add config for kallisto · 4d2a35fa
  mherbett authored 6 years ago
  
  4d2a35fa
- RNAseq.n : add kallisto block fo paid nd · e2c3dace
  mherbett authored 6 years ago
  
  e2c3dace
- rnasq.coni : add block config fo bedools · c275adc6
  mherbett authored 6 years ago
  
  c275adc6
- mRNAseq.n : corect eo astq to fasta in params.fastq · b1ce329f
  mherbett authored 6 years ago
  
  b1ce329f
- RNASEQ.nf : add block fo bedtools (do no emove channel) · c4c472cc
  mherbett authored 6 years ago
  
  c4c472cc
- RNASEQ.nf miy fo paid nd · 1592b47c
  mherbett authored 6 years ago
  
  1592b47c
- RNASq.cni add conig for UrQt · f49c0c73
  mherbett authored 6 years ago
  
  f49c0c73
- RNASeq.nf : emove channel caion, and modiication of inpu fil m cutadap · b9f3d348
  mherbett authored 6 years ago
  
  b9f3d348
- RNASeq.nf : addin code fo UrQt for quality timming · 16954d52
  mherbett authored 6 years ago
  
  16954d52
- RNASeq.nf : mov cod o qualiy imin, kp adaptao rmoval · d91a71d5
  mherbett authored 6 years ago
  
  d91a71d5
- RNASeq.nf : removed co o sinle end triming · 48ca4a68
  mherbett authored 6 years ago
  
  48ca4a68
- RNASEQ.config : add code configuatio o cutadapt removal adaptatr · 7d39b772
  mherbett authored 6 years ago
  
  7d39b772
- RNASeq.nf : add code for cutadapt · 99b2a9b9
  mherbett authored 6 years ago
  
  99b2a9b9
- fasta_sampler : add } · bc53c98c
  mherbett authored 6 years ago
  
  bc53c98c
- fasta_sampler : output file dependent of the name of the input file · a56b851c
  mherbett authored 6 years ago
  
  a56b851c
- fasta_sample : add mode:copy · 554d2b07
  mherbett authored 6 years ago
  
  554d2b07
- fasta_sampler : add channel · 5beebaae
  mherbett authored 6 years ago
  
  5beebaae
- fasta_sample: add pocess · 87304ac7
  mherbett authored 6 years ago
  
  87304ac7
- TP.md: add nextflow options · 6289b049
  Laurent Modolo authored 6 years ago
  
  Verified
  
  6289b049
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · b8f2a45f
  Laurent Modolo authored 6 years ago
  
  Verified
  
  b8f2a45f
- add sge config for some modules · 3454e1e8
  Laurent Modolo authored 6 years ago
  
  Verified
  
  3454e1e8
- TP.md: fix typo · 1e57a68d
  Laurent Modolo authored 6 years ago
  
  Verified
  
  1e57a68d
- TP.md: PSMN section · 98db0358
  Laurent Modolo authored 6 years ago
  
  Verified
  
  98db0358
- Kallisto.nf: fix paired end · 0dba9f2b
  Laurent Modolo authored 6 years ago
  
  Verified
  
  0dba9f2b
- Kallisto.nf: fix paired name · 1c82c356
  Laurent Modolo authored 6 years ago
  
  Verified
  
  1c82c356
- urqt.nf: improve input · a97e28f0
  Laurent Modolo authored 6 years ago
  
  Verified
  
  a97e28f0
- trimming: make output channel more clear · 52d58451
  Laurent Modolo authored 6 years ago
  
  Verified
  
  52d58451
- TP.md: add info on project visibility · 462e3dd0
  Laurent Modolo authored 6 years ago
  
  Verified
  
  462e3dd0
- TP.md: add Kallisto section · efbf5499
  Laurent Modolo authored 6 years ago
  
  Verified
  
  efbf5499
- TP.md: add bedtool section · 955c41f2
  Laurent Modolo authored 6 years ago
  
  Verified
  
  955c41f2
- BEDtools: add tests files · b6575e65
  Laurent Modolo authored 6 years ago
  
  Verified
  
  b6575e65
- UrQt: fix docker container version · 4d440098
  Laurent Modolo authored 6 years ago
  
  Verified
  
  4d440098
- mv test.sh file from docker_modules to nf_modules · 8aee48b9
  Laurent Modolo authored 6 years ago
  
  Verified
  
  8aee48b9
- doc: add webide.png · d254a0d5
  Laurent Modolo authored 6 years ago
  
  Verified
  
  d254a0d5
- TP.md: add cutadapt.config section · 7449f56c
  Laurent Modolo authored 6 years ago
  
  Verified
  
  7449f56c
Jun 05, 2018
- TP.md: add cutadapt and urqt section · f495e035
  Laurent Modolo authored 6 years ago
  
  Verified
  
  f495e035
- TP.md: fasta_sampler section · 8a2d1d85
  Laurent Modolo authored 6 years ago
  
  Verified
  
  8a2d1d85
- TP.md: add definition of process and channel · 46372ef3
  Laurent Modolo authored 6 years ago
  
  Verified
  
  46372ef3